Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1449 ATGATTACTAATGGGACAATAACCATGGATCCAAATTGTTTCCTCAAGCTCATATTGGTACTAATAATACTCCTCCTAGGGTTTCTTGCTTGGTTTGAAAACAAAAGAACAAACTCAAATAACAAAAGGGAAGAGATAGTGCAAGTTAGTGATGAAATAAATCTATTGTTTGAACAAGATCATGAGGACAACATAATATCCATTGGCTTAAGTGAATATTGTGTTTGCTCCTTTTGTGGCAAATTAAGCAACATAATCACAAGATGCTCTCGATGCAAAAATTATACATATTGCTCAAAAGAATGCCATGTGATGCACTGGACATGTTGGCATAGAGACGAATGTTTTGAGGTAATGTCTACAGAAGATCATCAAGAATCATCTTTTCATGGATCCCAATGCTTTCACTTGGAGCCTAGAAACGAAACCTCTAATTACTCATTCAATGATGATGATGAGCAAAAACCATATGAAGGAGATGTTTATTATATTGAAGGAGGAGAAGATAGTGATGAGTCAAATAAAGAAATAACAAGGGGGCTAATTCAGCATGATGGCATTTTCAGTAATAACAGTGATAGCTGTGCAGTTTGTGGTAATCCATGCTCCAAAAAATGCTCAAGATGCAAAGCTATAAAATACTGCTCACAAACATGTCAACATTTTGATTGGAAATCCGGGCATAAATTTCAATGTTGTGTTAAGATGAAAAGTTCAACTCAAGTAGCAACAAGCAATCAAGAATGGCCCGTTGGTGAAAATGTTATAATGCCTCCAAATCTTGATGAGGTGGCATATACTGATCATTCATATGACACTCTTTGCTTGGAATTTCATTCAGAAGAAAACACCAAGGCTCTCATTTTAAGTTCACAGGAAGCTAACAACAACGTAGAAGAGGTTGAAGAAAAAATGAGAAACTTAAAAGAAGAATTGGAAATGATCAGAAATGAAAATATAACACTGCAAGCAAAGCTTGAGTATTGGAAAATTAGAGCAAAGTATTCCGCTGATAGACTTTACAATTTCAAGAAAGAGAATCAGCACCAGTTGTTAATATTGAAGCATGAAAATGAGTTGACATCAAATGCCGAGAAACAAGCACGTCAAATGGTTACTAATTTATCTCAGAGATTACACTGTTTGCAGATTTCAATTGAAACTGGAGTAGCAGAGAGGAAAAAACAGGAAGAATTTATATATGTGCTACAGAATGAATGTACAAAGGCTAAGAGAGATTTTCAAGAACAAAACAAGTATGTTGAAAGGCTTAGACAGAAGCTTGATGATGCAACTCAATTTCCTATGAGAATAGCTGAAGAAACAAGACAAAAGTTAGCCATTACTTCCAATGCAATTTTTGCTAATGAATTCAAGCCTGCCGTTGAGGTGTCCAAGACAATCAGTTTAAGCAGAAATCCAACCTTGACTAGTCAGTGTTGTACAATTTGCTTAAGCAATGAGAAGGACTTGGCCTTTGATTGTGGGCACATGACTTGCAAAGAGTGCGGATATAAAATTCGCAAGTGTCATATATGTCGAAAGAAGATCGCTAATCGTATCAGGTTGTTCCCGGGGTGA 1581 0.3599 MITNGTITMDPNCFLKLILVLIILLLGFLAWFENKRTNSNNKREEIVQVSDEINLLFEQDHEDNIISIGLSEYCVCSFCGKLSNIITRCSRCKNYTYCSKECHVMHWTCWHRDECFEVMSTEDHQESSFHGSQCFHLEPRNETSNYSFNDDDEQKPYEGDVYYIEGGEDSDESNKEITRGLIQHDGIFSNNSDSCAVCGNPCSKKCSRCKAIKYCSQTCQHFDWKSGHKFQCCVKMKSSTQVATSNQEWPVGENVIMPPNLDEVAYTDHSYDTLCLEFHSEENTKALILSSQEANNNVEEVEEKMRNLKEELEMIRNENITLQAKLEYWKIRAKYSADRLYNFKKENQHQLLILKHENELTSNAEKQARQMVTNLSQRLHCLQISIETGVAERKKQEEFIYVLQNECTKAKRDFQEQNKYVERLRQKLDDATQFPMRIAEETRQKLAITSNAIFANEFKPAVEVSKTISLSRNPTLTSQCCTICLSNEKDLAFDCGHMTCKECGYKIRKCHICRKKIANRIRLFPG* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1449 526 ProSiteProfiles Zinc finger MYND-type profile. 76 115 IPR002893 -
Tpr7g1449 526 SUPERFAMILY HIT/MYND zinc finger-like 192 235 - -
Tpr7g1449 526 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 30 133 - -
Tpr7g1449 526 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 192 381 - -
Tpr7g1449 526 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30 133 - -
Tpr7g1449 526 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 192 381 - -
Tpr7g1449 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 525 IPR013083 -
Tpr7g1449 526 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Tpr7g1449 526 Gene3D - 187 239 - -
Tpr7g1449 526 Coils Coil 284 325 - -
Tpr7g1449 526 Pfam MYND finger 195 232 IPR002893 -
Tpr7g1449 526 Pfam MYND finger 76 115 IPR002893 -
Tpr7g1449 526 Gene3D - 69 121 - -
Tpr7g1449 526 ProSiteProfiles Zinc finger RING-type profile. 481 514 IPR001841 -
Tpr7g1449 526 ProSiteProfiles Zinc finger MYND-type profile. 195 232 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1449 Tpr-Chr7 15960703 15969131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1449 191 232 Miscellaneous Gene Families AT4G31670 54.762 6.22e-10 59.7