Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1335 ATGGCTTTGCTTTGTGGTTCACCATCCGTCACGTTCCCTTCATCTACATTCCCTCATCACAACAATTCAACAACTAAATTTTCCTTTGTTACTTCCCAATTCCCACTTTCAAACCTTTCATTTTCTTCAATTCGTACCCATTTCTCTCCATCTTTCATTGTTCGTTCTCAGCAGGACACTTCATTGGTTGAAGAAGATCCACGGTTCATCTGTCTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCCGATCATGTCAATACAGAGAAAACATGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTGGCATCAACCATTGCTAATCACATCCGAGGCAAAAATCTAGTGACTTATACACCCAGTGTGGATATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGCGGGAAAAAGAGGACCCAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAATCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACACGCTGTTCGTGGCATGCTTCCCAAAGGGAGGCTTGGCAGGACTCTATTCACACGTCTGAAGGTTTATAGCGGCCCAGATCATCCACACGAAGCACAGCAGCCCATTGATTTGCCGATTAGGGATAAGAGAATACAGTTGCAGAGCTGA 717 0.4379 MALLCGSPSVTFPSSTFPHHNNSTTKFSFVTSQFPLSNLSFSSIRTHFSPSFIVRSQQDTSLVEEDPRFICLEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTIETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQPIDLPIRDKRIQLQS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1335 238 Hamap 50S ribosomal protein L13 [rplM]. 102 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 Pfam Ribosomal protein L13 100 218 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 PANTHER BNAA02G18970D PROTEIN 57 237 - -
Tpr7g1335 238 CDD Ribosomal_L13 102 215 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 PANTHER RIBOSOMAL PROTEIN L13 57 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 TIGRFAM rplM_bact: ribosomal protein uL13 96 227 IPR005823 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 SUPERFAMILY Ribosomal protein L13 97 229 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 Gene3D Ribosomal protein L13 91 234 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tpr7g1335 238 ProSitePatterns Ribosomal protein L13 signature. 192 214 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1335 104 238 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.147 2.55e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1335 7 14158739 14163418 Tpr7g1335 7 14158739 14163418 ECH