Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0849 ATGGCTTTTGCAGGAACAACTCAAAAGTGCATGTCTTGTGACAAAACCGTTTATCTTGTTGATAAGTTGACTGCAGATAACCGAGTTTACCACAAAGGTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAACTCTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCTAAACCAGAAAAAACCAGTGATAATGAGAAACCTGCAGCAGCCAAAGTGTCTAGCATGTTTGGTGGTACCAGAGAGAAATGTGCTGGTTGTCAGAAAACAGTTTACCCTACTGAAAAGGTTAGTGTGAATGGAACTCCTTATCATAAGAGTTGTTTCAAATGCATTCATGGAGGGTGTGTTATAAGTCCTTCTAATTACATTGCACATGAAGGAAAACTGTATTGTAAACACCACCATATCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAGCTTGAAGGTGATCATGAGAAGAATGCTAACATTGAAGTAGTTGCAGCTGAGACATGA 579 0.399 MAFAGTTQKCMSCDKTVYLVDKLTADNRVYHKGCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTSDNEKPAAAKVSSMFGGTREKCAGCQKTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNANIEVVAAET* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0849 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Tpr7g0849 192 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Tpr7g0849 192 Pfam LIM domain 110 164 IPR001781 -
Tpr7g0849 192 Pfam LIM domain 10 64 IPR001781 -
Tpr7g0849 192 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tpr7g0849 192 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 186 - -
Tpr7g0849 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tpr7g0849 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tpr7g0849 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Tpr7g0849 192 Gene3D Cysteine Rich Protein 105 174 - -
Tpr7g0849 192 Gene3D Cysteine Rich Protein 4 74 - -
Tpr7g0849 192 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tpr7g0849 192 CDD LIM2_SF3 110 170 - -
Tpr7g0849 192 CDD LIM1_SF3 6 68 - -
Tpr7g0849 192 SMART lim_4 9 61 IPR001781 -
Tpr7g0849 192 SMART lim_4 109 161 IPR001781 -
Tpr7g0849 192 PANTHER OS06G0237300 PROTEIN 1 186 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0849 Tpr-Chr7 7547589 7549841 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr7g0849 LIM 5.6e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3620 1 40361706 40364337 Tpr7g0849 7 7547589 7549841 PCT