Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3877 ATGGTTTATACTTCTCTTCCACCTTATATGGATCCAGCCAACTGGAATCAACAGCAACCAAATCATCAAGGGGCAAACACTATTGTCAACACTCCTCTTTTTACTACACCATCACAGCCTCCACCATCGAATCTGACACCATCACAGCCTCATGGAGGCTCGATCAGGCCAGGTTCGATGGCAGATAGGGCTAGGATGGCCAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCTCCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCACAGCCCCGCCACTTCTGCAAGACATGTAGAAGGTACTGGACAAGGGGCGGCGCTCTAAGAAGCGTCCCAGTTGGAGGTGGTTGCCGAAGGAATAAGAGAACTAAATCAAGCAGCAACAACACCTCAAAGTCTCCAGTTAGCTCGGATCGCCAAACTAGCTCTGCAAACAACTCTCCCGCGGTACTTAGTTCCCCGACTCCTCCACCGATGAGATTCATGGCTCCTTTGCATCAACTCGGCGATCACCTCAGTGAAATAGGGTTAAACTATGGTTTTTCTGGTCCAATGGGAGGAGTAGGAGACTTGAATTTCCATATTGGAAGCTCTTTAGGTGGAACCGTTGGTAGCAACAGTGTTAGTGGTGGTGGTGGTGGTGTTTCTGCTTCGATTATACCCGTTGGTGGGTTCGAGCAATGGAGGACGCCACAACAAACTCAACAATTTCCATTCTTAACAAGCTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTGGTGGTGGCAATAATCAAGCACATATATATGGTGGTGTCTCTAAGGTATTATCAACTAATTCTAGTGTGAAAATGGAAGAAAATCAATCTAGACAATTCTTGGGAATGATCAATAATAACAACAACAACAACAACAATAATAACCCTAATAGTGAACAATATTGGAGTGCTTCTAATGGTAATGGTGGTGCTACTTCAGCTTGGACAGATCTTGCAGCTTTTAACTCTTCTTCAACAACCACCAATTCCGACTATAGAACTTAA 1065 0.4441 MVYTSLPPYMDPANWNQQQPNHQGANTIVNTPLFTTPSQPPPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSSNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMAPLHQLGDHLSEIGLNYGFSGPMGGVGDLNFHIGSSLGGTVGSNSVSGGGGGVSASIIPVGGFEQWRTPQQTQQFPFLTSLEASSSHGLLYPFEGGGGGGNNQAHIYGGVSKVLSTNSSVKMEENQSRQFLGMINNNNNNNNNNNPNSEQYWSASNGNGGATSAWTDLAAFNSSSTTTNSDYRT* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3877 354 MobiDBLite consensus disorder prediction 37 56 - -
Tpr6g3877 354 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 17 347 - -
Tpr6g3877 354 MobiDBLite consensus disorder prediction 128 158 - -
Tpr6g3877 354 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Tpr6g3877 354 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Tpr6g3877 354 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Tpr6g3877 354 MobiDBLite consensus disorder prediction 121 163 - -
Tpr6g3877 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 347 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3877 Tpr-Chr6 44070551 44072313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3877 38 344 C2C2-Dof Transcription Factor Family AT3G55370 41.463 8.46e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr6g3877 zf-Dof 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3877 - - gmx:100796820 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3877 6 44070551 44072313 Tpr6g3877 6 44070551 44072313 ECH