Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3155 ATGTTGGAGACAAAAGACTCTGCAATTAAACTGTTCGGTAAAACAATTCCGGTGCCGGAGATTCTTGTCGAAACTCCGGCTTTATCTTCTGGTGATGTTGTTGATGAGAGTATTGAATCTATTGATGATAAAAATCATGATTCCTCTACGAACTCTTCGAGGGAGTCACATAATACTAGAGATGATGCACATGAGCAAGAAATTGAGAAGGACACATCGGGAGACAAACAAACTGATGAAAAGAACGAAGGAGTCTCTATGCAATCGACTGGAGAGTTTACCAACCAAGATGCAGCCTCTGGGACTGGAGAAGAATCTATTACCGTGTCCACCGAAAGGGAGGATGCTACGTTGAAAACTTCAAAGACCGAAAAAGAAGAACAACAAGATGAAACAAGTAATTCACAGGATAAGATCCTCAAAAAACCTGACAAAATAATTCCTTGTCCCAGATGTAGAAGCATGGACACAAAGTTCTGCTACTATAATAACTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCCGGTGGAACCATGAGAAACGTACCTGTAGGTGCCGGTCGAAGAAAGAATAAGACCTCTTCTTCTCACTATCGTCAGATAACTGTCTCTGAAGCAACTCTACAAAATTCTCGGATACATCCTTCCTTGAAATGCAATGGTACAATCCTTACATTTGGATCCAATACACCCTTGTGTGAATCAATGTCATCTGTTTTGAAACTTGCTGATAAATCAGTGCAAAATTACACAAGAAATGGATTTCGTAAACCGGAAGTACTAAGAATTCATGTTCCTCATGCAAGTGGAGAAAATGGTGATGATCAATCCAATAAATCATCGATTACATCGACAAAGTCTATGGAAGTTGCAAGTACCAATGTATCCCAAGAACCAGGTATGCAGAACGGCCAGAGCTTCTCACCACAAGGGGCCTACTTTCCTCCGGGAACTCCTTGGTCTTTCCCATGGAGTCAAGTGCAATGGAGCTCATCGATTCCACCACCGACTTTTTGTCCACCGGGATTCTCCATGCCATTCTATCCTCCGGCATCTTACTGGGGTTGTACCGTGCCAGGGGCATGGAACCTTCCATGGCAAACACAACCGTCTTCGCCAATTGGTGTAAACCCTAACTCAAGTCCAAACTCTCCAACATTAGGGAAACATTCAAGGGAAGACAACATGCTTAAATCGAGCGAAGATAGTAGGAAAGAAAGTAGAGAAGAAAAGTGTTTGTGGTTTCCAAAAACTTTGAGGATCGATGACTCAGGAGAAGCAGAAAAAAGCTCTTTATGGACAACACTTGGGATTAAAAATAACAAAGCCGACTCAGTTTCTTCAGGAAGACTCTTTAATGTATTCCCTTCAAAATGTGACGAACCAAATCACTTGGTACAAGCGTCTTCAATCTTGCAGGCCAATCCAGCCGCTTTAACTAGGTCACTTAACTTTCGTGAAACTTCATAG 1494 0.4224 MLETKDSAIKLFGKTIPVPEILVETPALSSGDVVDESIESIDDKNHDSSTNSSRESHNTRDDAHEQEIEKDTSGDKQTDEKNEGVSMQSTGEFTNQDAASGTGEESITVSTEREDATLKTSKTEKEEQQDETSNSQDKILKKPDKIIPCPRCRSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSSSHYRQITVSEATLQNSRIHPSLKCNGTILTFGSNTPLCESMSSVLKLADKSVQNYTRNGFRKPEVLRIHVPHASGENGDDQSNKSSITSTKSMEVASTNVSQEPGMQNGQSFSPQGAYFPPGTPWSFPWSQVQWSSSIPPPTFCPPGFSMPFYPPASYWGCTVPGAWNLPWQTQPSSPIGVNPNSSPNSPTLGKHSREDNMLKSSEDSRKESREEKCLWFPKTLRIDDSGEAEKSSLWTTLGIKNNKADSVSSGRLFNVFPSKCDEPNHLVQASSILQANPAALTRSLNFRETS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3155 497 MobiDBLite consensus disorder prediction 274 320 - -
Tpr6g3155 497 Pfam Dof domain, zinc finger 145 201 IPR003851 GO:0003677|GO:0006355
Tpr6g3155 497 MobiDBLite consensus disorder prediction 377 412 - -
Tpr6g3155 497 PANTHER CYCLIC DOF FACTOR 2 1 496 IPR045174 GO:0003700|GO:0006355
Tpr6g3155 497 MobiDBLite consensus disorder prediction 377 398 - -
Tpr6g3155 497 MobiDBLite consensus disorder prediction 279 320 - -
Tpr6g3155 497 MobiDBLite consensus disorder prediction 108 142 - -
Tpr6g3155 497 MobiDBLite consensus disorder prediction 83 107 - -
Tpr6g3155 497 MobiDBLite consensus disorder prediction 37 82 - -
Tpr6g3155 497 ProSitePatterns Zinc finger Dof-type signature. 149 185 IPR003851 GO:0003677|GO:0006355
Tpr6g3155 497 MobiDBLite consensus disorder prediction 18 142 - -
Tpr6g3155 497 ProSiteProfiles Zinc finger Dof-type profile. 147 201 IPR003851 GO:0003677|GO:0006355
Tpr6g3155 497 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3155 Tpr-Chr6 34051349 34054496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3155 6 497 C2C2-Dof Transcription Factor Family AT5G39660 42.607 1.06e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr6g3155 zf-Dof 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3155 - - aprc:113862693 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3155 6 34051349 34054496 Tpr3g4409 3 49161883 49165283 ECH
Tpr6g3155 6 34051349 34054496 Tpr6g3155 6 34051349 34054496 ECH
Tpr6g3155 6 34051349 34054496 Tpr2g0338 2 4002273 4005428 ECH
Tpr2g1994 2 23780047 23782248 Tpr6g3155 6 34051349 34054496 ECH