Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3088 ATGGTGAAGATTTGCTGCATTGGTGCCGGATATGTCGGTGGTCCAACAATGGCAGTCATTGCACTTAAGTGTCCATCCATTGAAGTGGCTGTTGTTGACATATCTATATCCCGCATTGCAGCCTGGAACAGTGAAGTGCTTCCGATCTATGAACCTGGTCTTGACGATGTTGTCAAGCAATGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTTAACACCCCGACTAAAACTCAGGGTCTCGGTGCTGGCAAAGCAGCAGATTTGACCTATTGGGAGAGCGCTGCTCGTATGATTGCTGATGTCTCAAAGTCTGACAAAATCGTTGTGGAGAAATCAACTGTCCCTGTCAAAACTGCTGAGGCAATCGAGAAAATTTTGACTCACAATAGCAAGGGAATCAAATTCCAGATTCTATCAAACCCAGAATTCCTTGCTGAGGGAACCGCAATCAGAGATCTTTTTAATCCAGACCGTGTTCTTATCGGAGGCAGGGAAACTCCCGAAGGCCTGAAAGCTGTTGAAACATTGAAGAGTGTTTATGCTCAATGGGTTCCCGAGGAGCAAATACTAACCACAAATCTTTGGTCTGCAGAGCTCTCTAAGCTTGCTGCTAACGCCTTTTTGGCTCAGAGGATTTCGTCTGTTAATGCAATGTCAGCACTTTGCGAGGCAACCGGTGCAAATGTTCAACAAGTGTCCTTTGCTGTCGGCACTGACTCAAGGATTGGACCCAAGTTCCTCAACGCTAGTGTCGGTTTTGGTGGATCCTGCTTCCAGAAGGATATCTTGAACCTTGTCTACATCTGTGAGTGCAACGGCCTTCCTGAGGTTGCGGAGTACTGGAAACAAGTTATCAAGATTAACGATTATCAGAAGAGCCGTTTTGTGAACCGTGTAGTTGCATCTATGTTCAACACGGTTTCAAACAAAAAGATTGCTATTCTTGGATTCGCATTCAAGAAAGATACCGGTGACACAAGGGAGACTCCCGCCATTGATGTGTGCCAGGGACTACTTGGCGATAAAGCCAACCTGAGCATATTCGACCCACAAGTTACCGAGGACCAAATCCAGAGGGATCTATCCATGAACAAGTTTGACTGGGACCATCCTATCCATTTGCAGCCAACTAGTCCAACAACTGTGAAGAAAGTGAGTGTTGTTTGGGATGCATATGAAGCAACAAAAGATGCACATGGTATTTGCATTCTTACTGAATGGGATGAATTCAAGAATCTTGATTATCAAAGGATTTATGAGAACATGCAAAAACCAGCATTTGTTTTTGATGGAAGGAACATTGTCGATGCTGAGAAGCTACGTGAGATTGGTTTCATTGTTTATTCAATTGGAAAACCATTGGATGCATGGCTCAAGGATATGCCAGCTGTGGCATAA 1443 0.4463 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISISRIAAWNSEVLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIRDLFNPDRVLIGGRETPEGLKAVETLKSVYAQWVPEEQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIFDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGICILTEWDEFKNLDYQRIYENMQKPAFVFDGRNIVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3088 480 Gene3D - 241 478 - -
Tpr6g3088 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Tpr6g3088 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 IPR001732 GO:0016616|GO:0051287
Tpr6g3088 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Tpr6g3088 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 201 IPR036291 -
Tpr6g3088 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Tpr6g3088 480 Gene3D - 209 240 - -
Tpr6g3088 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 463 IPR036220 -
Tpr6g3088 480 Gene3D - 1 208 - -
Tpr6g3088 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 480 - -
Tpr6g3088 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Tpr6g3088 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Tpr6g3088 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Tpr6g3088 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Tpr6g3088 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3088 Tpr-Chr6 33478156 33480932 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3088 6 33478156 33480932 Tpr5g3077 5 53609851 53612927 ECH
Tpr6g3088 6 33478156 33480932 Tpr6g3088 6 33478156 33480932 ECH
Tpr2g2063 2 24732520 24735173 Tpr6g3088 6 33478156 33480932 ECH
Tpr2g0266 2 3370622 3373313 Tpr6g3088 6 33478156 33480932 PCT