Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2960 ATGGCTTCAATCACTCTTTCTCCAAATGCTTCCCCCATTGCATTGCCTCCGTCATCTAGTGCTGCTGTTTTGTCACCACCACCAACACCTAACACTTCTCAATCCAATCAATCATCTACTCCGCCGCAGGCCGTGCCTGCAACTTCTCCTCCTTCTCCGTCTCCACCGCAGGCCGTGCCTGTAACTTCTCCTCCTGCACCGTCGAATGCACCACCACCAACTTCACCACCATCACCTCCTGCATCACCACCTCCTGCACCAGTTGTAACATCACCTCCTGCACCAGTGGTAACTGCCCCTCCTCCATCTAAAACTTCACCTTCTGTCCCAAATTTGTCTCCACCACCTCCATCAGCTGATTCCCCTCCTCCTCAATCATCAAAGCCACCTCCTTCTCAATCAATTTCGCCGTCTCCTCCTCCTCCGGCCAATGTACCAAATCCACCTCCTTCTCAATCAATTTCGCCGTCTCCTCCTCCTCCAGCCAATGTACCAAATCCACCATCTTCCAATTCTCCTCCTGCACCACAAGCAAAGCCACCAAAAAGTAACACTCCTTCACCTCCTGCACCACAAGCAAAGCCACCAAAAAGTAATACTCCTTCACCTCCTGCACCACAAGCCAAGCCACCAAAAAGTAACAATCCTTCACCTCCTTCACATGATGCATCTCCTCCATCGGTTTCTCAATCTCCTCCTTCCCCTTCCACCGGTGGTCCTCCTTCGGCTTCCACTGTTGTTCCACCTCCATCTACATTGCCATCAACTCCTCCTTCAGTCCCTTCAGGATCTGCAGCACCTCCAGCAACTTCTTTGCTTCGTCCTCCTACGAATGAAACAGTACCTGATGGTGGTCCAACTGAGAAACCAACTGCTAGACCAACTGTTGATGGCTCTGGTAATATAGGCACGAACAACACGCCTTCAAATTCAGGAGGGTTAAAGACCGGAGGAGCTGTTGCCATTGGCGTCGTAGTTAGTTTAATTGTTCTCAGCCTTCTTGGTATGGCTGTGTGGTTTGTACAGAAAAAGAAGAAGGGAAAAGGACCAAGAGATGATTCTGCCGCACCTTCCCCATTTGCCTCTTCTCAGAATTCAGGTACATTGTTCTTGAGGCCACAGTCTCAAGCTAATTTTGTAGGGAGTGGCAGCGGCAATGAATATGTGTATTCACCATCAGAGCCAGGTGGAGTAAATAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCAGAGGCGAATAAATTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTCACAGATGGAAGAGAAGTAGCTGTGAAGCAGCTTAAAATTGGTGGTGGACAAGGGGAACGTGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTTGTCTATGAGTATGTTCCTAACAATACTCTTCATTACCATTTACATGATGATAAAATACCTGTTCTGGACTGGTCTATCAGAGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATATCTTACCTCCATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAATCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTTGTTTCAGATTTTGGGCTTGCGAAATTAGCGTTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGGAAATTGACTGATAAGTCTGATGTATATTCCTTCGGTGTTGTGCTTTTGGAGCTAATTACAGGTCGAAAACCCGTAGATGCCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTGTTGAATGAAGCCCTCGAGAAAGAGAACTTTGAAACTTTGGCGGATCCAAGACTAGGAAAGAACTACAATAGAATTGAAATGTTTAGGATGATTGAAGCTGCAGCAGCTTGCGTGCGTCACTCCTCGGTTAAGAGGCCACGGATGAATCAGGTTATGAGAGCTTTCGATTCCATGGACGAGTCTACAGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCAGTGTTAGATTCTGGACAGCAATCTGCAGAGATAAGAAGGTTTAGGAGAATGGCTTTTGGAAGCCAAGATAGTACAAGTTTCTATAATGAGTCTCAAAGTAGCTATAGGAGTAGAGACCAGGACTCTACAACTATGTTCCCCCAAAATCAATCTCGGTCTTGGAACGTTCGAGACGACTCTTTATAG 2313 0.4635 MASITLSPNASPIALPPSSSAAVLSPPPTPNTSQSNQSSTPPQAVPATSPPSPSPPQAVPVTSPPAPSNAPPPTSPPSPPASPPPAPVVTSPPAPVVTAPPPSKTSPSVPNLSPPPPSADSPPPQSSKPPPSQSISPSPPPPANVPNPPPSQSISPSPPPPANVPNPPSSNSPPAPQAKPPKSNTPSPPAPQAKPPKSNTPSPPAPQAKPPKSNNPSPPSHDASPPSVSQSPPSPSTGGPPSASTVVPPPSTLPSTPPSVPSGSAAPPATSLLRPPTNETVPDGGPTEKPTARPTVDGSGNIGTNNTPSNSGGLKTGGAVAIGVVVSLIVLSLLGMAVWFVQKKKKGKGPRDDSAAPSPFASSQNSGTLFLRPQSQANFVGSGSGNEYVYSPSEPGGVNSSRSWFTYEELIQATNGFSEANKLGEGGFGCVYKGLLTDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYEYVPNNTLHYHLHDDKIPVLDWSIRVKVAAGAARGISYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLNEALEKENFETLADPRLGKNYNRIEMFRMIEAAAACVRHSSVKRPRMNQVMRAFDSMDESTDLNNGMKPGQSSVLDSGQQSAEIRRFRRMAFGSQDSTSFYNESQSSYRSRDQDSTTMFPQNQSRSWNVRDDSL* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2960 770 Pfam Protein tyrosine and serine/threonine kinase 420 687 IPR001245 GO:0004672|GO:0006468
Tpr6g2960 770 Gene3D Phosphorylase Kinase; domain 1 392 492 - -
Tpr6g2960 770 Gene3D Transferase(Phosphotransferase) domain 1 493 711 - -
Tpr6g2960 770 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 121 739 - -
Tpr6g2960 770 SUPERFAMILY Protein kinase-like (PK-like) 395 689 IPR011009 -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 735 770 - -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 25 43 - -
Tpr6g2960 770 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Tpr6g2960 770 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 121 739 - -
Tpr6g2960 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Tpr6g2960 770 MobiDBLite consensus disorder prediction 345 366 - -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 697 716 - -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 1 18 - -
Tpr6g2960 770 ProSiteProfiles Protein kinase domain profile. 417 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2960 770 SMART serkin_6 417 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g2960 770 PRINTS Proline rich extensin signature 8 29 - -
Tpr6g2960 770 PRINTS Proline rich extensin signature 35 51 - -
Tpr6g2960 770 PRINTS Proline rich extensin signature 52 69 - -
Tpr6g2960 770 PRINTS Proline rich extensin signature 72 97 - -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 44 264 - -
Tpr6g2960 770 CDD STKc_IRAK 423 688 - -
Tpr6g2960 770 MobiDBLite consensus disorder prediction 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2960 Tpr-Chr6 32023529 32029378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2960 309 686 Trihelix Transcription Factor Family AT1G68690 65.963 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tpr6g2960 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2960 - - gmx:100784873 798.89