Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2862 ATGGTCTTCCCCTCCCTTCCAATCTATCAAGATCCACCCAACTGGTCACCACAGCAAGGAGGAATTGGTATTGGTACTCAAAATCCATCACCTCTGCAGCAGCCATCAGCTTCAACGGTGATTGTTACTGTTGAAGCTGATGGCAGCTACCAAGGGTCTATAAGACAAGGATCAATGACCGATCAAGCTAAGATGTCCAAGATACACCAAAATGATGTTGCTGCAACACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTACAACAACTACAATCTCTCACAACCTCGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGAGGTGCACTTAGAAATGTTCCTGTTGGAGGTGGTTGTAGAAGGAATAATAAAAGAAGCAAAGGAAATTCAATATCAAAATCAACTTCAAAACCTAATCGTAATGATCATCGCCTAGTAGGTACTGGTGGTGGTGGTGGTGGTTCTAGCTCAGTAAGTGCAAATTCTTCTTCTATTAATGGTTGCACTAATTCTAATGTGAATGTGGGGATCTCTCATTTTCCTACACAATTCCCATTTTTGGCCTCTTTGCATCACTATAACAACAATGACTATGTTTCTCAAGGCATTGGTCCTATGGTGACAAAAAATATTACCAATAGTACTAATACTAGTGTTGAGTTTCAACTTGGTAGTGGTTTTTCAATTGGTAATACTACTAATGGTGGATCTTTGTTGTTATCAAATGGCATTGGTGAACAATGGAAGTTTCCGAATTCGCTACAAGTTCATCAGCAACAACAGCAAGAGAATCACCAACAATTCCCTTTCTTGACTAGTTTGGAGCCACAAATTGGATTATTTCAGTTTGGTGGAGAAAATAATGATGAAACTCAAAGAAATTTTATTCGCTCTAAGGCAACGGATTCTTCAAGTGTTAGTATTGGAATGATGCCTCAAGTTAACATAGTAAAAATGGAAGAAAATAATTGTCAAGGGTTGAGTTTGTCAAAAAATCTCTTGAGTGGTTTAGGAAATAGTAATGATCTATTTTGGAATGGAAATGGAAGTGGTAATGCAAATGCATGGAATGAATCTCCTAGTTTCACTCCATCACCAAGTCAATTGTTATGA 1134 0.381 MVFPSLPIYQDPPNWSPQQGGIGIGTQNPSPLQQPSASTVIVTVEADGSYQGSIRQGSMTDQAKMSKIHQNDVAATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRSKGNSISKSTSKPNRNDHRLVGTGGGGGGSSSVSANSSSINGCTNSNVNVGISHFPTQFPFLASLHHYNNNDYVSQGIGPMVTKNITNSTNTSVEFQLGSGFSIGNTTNGGSLLLSNGIGEQWKFPNSLQVHQQQQQENHQQFPFLTSLEPQIGLFQFGGENNDETQRNFIRSKATDSSSVSIGMMPQVNIVKMEENNCQGLSLSKNLLSGLGNSNDLFWNGNGSGNANAWNESPSFTPSPSQLL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2862 377 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Tpr6g2862 377 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Tpr6g2862 377 MobiDBLite consensus disorder prediction 123 163 - -
Tpr6g2862 377 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 27 370 - -
Tpr6g2862 377 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 370 IPR045174 GO:0003700|GO:0006355
Tpr6g2862 377 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2862 Tpr-Chr6 31051660 31053641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2862 54 134 C2C2-Dof Transcription Factor Family AT2G37590 72.840 1.48e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr6g2862 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2862 - - cam:101502096 499.59