Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1223 ATGAACATGTCTGAGACTGAGAAGAATCCTGGTATTAGGCTATTTGGGTGGAAGATTCCGGTGCCGGAATGTCAAATTCCGACCAACTCTGGACCCATGGATACTTGCAGCAGTACAAAGAAAACAGAAGTGGAAATACTTTGCGCAGAAAAATCTGAGCAACAAGACAATTCATCCGATTCAATGGATAGTAAACAGGAGACTCGTCATGATATGCAAGAAAAGGAGCCAATAGTGAATTCGAAGTCCGCTGACGATAATACAGAGTCCGGTAATACGGATGAAGAAAAAATCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAAAAGTTGGGATACCAAGTTTTGTTATTTCAACAACTATAACGTCAACCAACCTCGGCATTTTTGCAAGAATTGTCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGTAGGCGGAAGAACAAGCATCTAGCTTCTCAATACCGACAAATTATAGTAACCTCGGACGGAATTCCAACCTCAAGGCTTGAAACAATACCCTCATCCACTCATCATACATCAACGGATAACGAAACTGTATTGAAATTTGGTCCAGATACCCCACTTTGTGAATCGATGGAGTCGATGCTTCATCTTAAAGACCAGAAAAGGAGTTCTGATGCAAATTCTATTAGTTGTGTGCAACATAGAGAGGAACCATCCCTCTATGGATCGTCTGTAACAAATACCAACACTCAAGGAAATGAAGTATCAGAACACAATGCATCAAATTGGTTGCAGTGTTATCCTGTTCCTCCATGGGTATTACCAATGAATCCGGGTTGGAATATGAATAATGTTGCTTCCATGGCAGCAGTTCATCCGACTTCAGCATCCATGTGCAACCCTTATAGCGTTGCTCCAACTACAATGCAATGGTGTCCGACACCTATGTTGGCGATTCCGGGAATTAGGCCACAAAACATACCTTTGCAACTTGTACCAGCATCAAATTGGAGCAGACCATCACTTTGCCTCTCGCCGCCTTCTTCCACAAGTAACAGTTGCTGCACGGGTAATGGCTCACAAACCCTAGGCAAGCACACTAGAGATACAGTTTTCACAGACCAAGATAAATCAGACAAGTCTGTCCCAGTTCGGAAAACGATTAGAATTAATGTCACAAATGAGGGCCCGATAAGTCCTATTCGAGCTACATTAGCTAACAAGACACCAACTCAGATTTTGGAAGCCAACTCAGCAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA 1293 0.4269 MNMSETEKNPGIRLFGWKIPVPECQIPTNSGPMDTCSSTKKTEVEILCAEKSEQQDNSSDSMDSKQETRHDMQEKEPIVNSKSADDNTESGNTDEEKILKKPDKIVQCPRCKSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTSDGIPTSRLETIPSSTHHTSTDNETVLKFGPDTPLCESMESMLHLKDQKRSSDANSISCVQHREEPSLYGSSVTNTNTQGNEVSEHNASNWLQCYPVPPWVLPMNPGWNMNNVASMAAVHPTSASMCNPYSVAPTTMQWCPTPMLAIPGIRPQNIPLQLVPASNWSRPSLCLSPPSSTSNSCCTGNGSQTLGKHTRDTVFTDQDKSDKSVPVRKTIRINVTNEGPISPIRATLANKTPTQILEANSAAISHAHTIQESI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1223 430 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Tpr6g1223 430 PANTHER CYCLIC DOF FACTOR 2 3 410 IPR045174 GO:0003700|GO:0006355
Tpr6g1223 430 MobiDBLite consensus disorder prediction 48 97 - -
Tpr6g1223 430 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Tpr6g1223 430 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Tpr6g1223 430 PANTHER CYCLIC DOF FACTOR 3-LIKE 3 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1223 Tpr-Chr6 12502645 12505708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1223 3 430 C2C2-Dof Transcription Factor Family AT3G47500 31.601 5.71e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr6g1223 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1223 - - cam:101500722 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1223 6 12502645 12505708 Tpr6g1223 6 12502645 12505708 ECH