Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3114 ATGCAGGAAATACATTCCATCGGAGCCGGCGGTACCAGGTTCTTCGGTGGCGGTGGAGCCGCTGACCGGAGACTCAGACCAAACCAAAACAACAACAACAACCAGACCCAACCAGTCTTGAAATGTCCTCGCTGTGAATCCATCAACACAAAATTCTGTTACTATAACAACTATAACCTCTCTCAGCCACGCCACTTCTGCAAAAACTGCCGTCGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCCGTCGGTGGCGGTTGTCGTAAATCTAAACGATCAACCAAACCAAAAAACTCTTCATCCTCTTCAGAAATCTCTACTTTGCCGATGACTCCACCGGAGAACAAATCGAACTCTCACTCAAGCAGTGAGAGTTCTAGCCTCACCGCCGCGGCGGTGACCGAGACTCTTTCCGAACAAAAACCGCTAAACTCTAACACGAAAATCAACAACACTGGTTTGGAGAATGATTCACTTGAACAAGGTTCAGGTGATTGTGGTATTTTCTCAGAGATCGCGAATTTTACAAGCTTGATCACTTCTTCCTCTAACGAGACATTGCCGTTTGGATTCGGTAACTGTAACGGTAACGGTAACGTTAACTGTCTGACCGATGCGTCGTCGTTTCAGTGGCAGAACCAAAAAGTGATGGATCAACAGAATCATCATCATCATGGAGATGCATTGAAGTTGTTACCGGAGAATATTGGTTCTGGATCGTTGATGGACCACAGTATTGATTTCTCTTTGCTACAGAGTAAAACTAGCAACGGTGGATTTGGATCGTTGGATTGGCAAGGTGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGGTTACTGGAATCATACTCACTGGACTGATCAGGATAATGACAATTCTACCCTCTTTCATCTTCCTTGA 921 0.4571 MQEIHSIGAGGTRFFGGGGAADRRLRPNQNNNNNQTQPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSTKPKNSSSSSEISTLPMTPPENKSNSHSSSESSSLTAAAVTETLSEQKPLNSNTKINNTGLENDSLEQGSGDCGIFSEIANFTSLITSSSNETLPFGFGNCNGNGNVNCLTDASSFQWQNQKVMDQQNHHHHGDALKLLPENIGSGSLMDHSIDFSLLQSKTSNGGFGSLDWQGGADQGLFDLPNTVDQGYWNHTHWTDQDNDNSTLFHLP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3114 306 MobiDBLite consensus disorder prediction 98 158 - -
Tpr5g3114 306 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Tpr5g3114 306 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Tpr5g3114 306 MobiDBLite consensus disorder prediction 25 39 - -
Tpr5g3114 306 MobiDBLite consensus disorder prediction 85 158 - -
Tpr5g3114 306 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 7 296 - -
Tpr5g3114 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 296 IPR045174 GO:0003700|GO:0006355
Tpr5g3114 306 MobiDBLite consensus disorder prediction 1 39 - -
Tpr5g3114 306 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3114 Tpr-Chr5 53928695 53930465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3114 22 306 C2C2-Dof Transcription Factor Family AT5G60850 43.791 1.15e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr5g3114 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3114 - - mtr:MTR_4g109980 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3114 5 53928695 53930465 Tpr5g3114 5 53928695 53930465 ECH