Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2430 ATGCAAGACCCAACAACATTCCAACCCATGAAACCAAATTTTCCAGAACAAGAACAACTTAAATGTCCACGTTGTGAATCAAACAACACAAAATTCTGTTATTACAACAACTATAATCTCTCACAACCTCGTCATTTTTGTAAAAACTGTAAAAGGTATTGGACCAAAGGTGGTTCTTTAAGGAACATTCCTGTTGGTGGTGGAACAAGAAAAGTCACAAAACGTTCATCAAATTCCAAACGTTCAACAACAACAACAACAACACCATCTTCATCTTCTTCAGCTCAAGTTTCTTCAGTTTCAGAATCTGACCCGACCCAGATTAAGAATAACCCGGTTGAGGAAAACCAAAGGGTTTTTGGTGGAGGGAGTTTTAGTTCACTTCTTGCATCAAGTGAGCGATTTGGGAATCTTTTTGAGGGTCTGAATTCAAATGGGTCGGGTTTGAAAATGGTACAAATGGGTGAATTTGGGGAGAATTTGAACTGTGACCCGGTTAGTAATTCGGGTCATAATAACCCGAGTGGTAGAGATGGTGAATCAGAGATTTTTCATGGTTTGCAAAATGGTGGTAATTCAAGTTGTTGGAATGGTAATCATGGTTGGTCTGATCTTGCAATATATACACCTAGCTCAAGTTATCAGTAG 648 0.3873 MQDPTTFQPMKPNFPEQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKVTKRSSNSKRSTTTTTTPSSSSSAQVSSVSESDPTQIKNNPVEENQRVFGGGSFSSLLASSERFGNLFEGLNSNGSGLKMVQMGEFGENLNCDPVSNSGHNNPSGRDGESEIFHGLQNGGNSSCWNGNHGWSDLAIYTPSSSYQ* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2430 215 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Tpr5g2430 215 MobiDBLite consensus disorder prediction 65 117 - -
Tpr5g2430 215 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Tpr5g2430 215 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Tpr5g2430 215 MobiDBLite consensus disorder prediction 78 114 - -
Tpr5g2430 215 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 215 - -
Tpr5g2430 215 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 215 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2430 Tpr-Chr5 45940555 45942435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2430 5 139 C2C2-Dof Transcription Factor Family AT1G51700 54.225 3.57e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr5g2430 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2430 - - zju:107403899 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2430 5 45940555 45942435 Tpr5g2430 5 45940555 45942435 ECH