Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1479 ATGGATGGGTTAGCTCCTAATTCATGTCCAAGACAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGATGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTATAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGATCAAGAAAGAACAAGAAAGTAATTAATCCTTCATCAACAAAAATTCCTGACCTAAATCCACCAACCCTAGTCCAAGTCTCACCTCTTTCGAATTCGCAAAACCCTAAAATGCAAGGAGGTCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCAACATCATCATGGTATGTCCTCATATGTTGAGATGCATAATAATAATGAATCATCTTCGTCGGCTCTTGATCTACTTAGGTCTAGCATGGCATCTAGAGGATTAAATCCTTATGCTAATAATAATAATACTTTGATGACAAACTCAAATACTATTTTTCCAAGTGGATTTCCCATGCAAGAAGTTAAACCTAGTCTTGGTTTTTCAATTGATGGAATTAATGGAAATAGATCATATGATGATCATGTTCATGTTCAAGAAGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGATGTTAATAAACAACTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATTCAACTGGATTTTGGAATGGAATGATTGGTGAAGGATCATGGTAA 780 0.3603 MDGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVINPSSTKIPDLNPPTLVQVSPLSNSQNPKMQGGQDLNLAFPSMENYHQHHHGMSSYVEMHNNNESSSSALDLLRSSMASRGLNPYANNNNTLMTNSNTIFPSGFPMQEVKPSLGFSIDGINGNRSYDDHVHVQEGGGGRLLFPFGDVNKQLSTSGVEVEHNKEQGNSTGFWNGMIGEGSW* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1479 259 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 6 254 - -
Tpr5g1479 259 MobiDBLite consensus disorder prediction 1 22 - -
Tpr5g1479 259 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Tpr5g1479 259 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 254 IPR045174 GO:0003700|GO:0006355
Tpr5g1479 259 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Tpr5g1479 259 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1479 Tpr-Chr5 28172796 28174949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1479 16 259 C2C2-Dof Transcription Factor Family AT3G61850 51.079 7.35e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr5g1479 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1479 - - gmx:778110 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1479 5 28172796 28174949 Tpr5g1479 5 28172796 28174949 ECH