Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0411 ATGAATGGTGAAGGTGACATGAGTGTTAAAGATAACAAAAATTCTAGTATCATGCTCTTTGGCAAGAAGATTCCGGTGCCGGAATATCATACTCCGGCGACATCTCAAAAGGGTTCTCAGATTCCGGCCAATTCTACAACCATGAATGCTTGCAGTAACTCAAAGCAAACAAGAATTGAAATGCCTCATACTCAAAACATTGAGAAATCAAAGAACTCTTCTAAAGAAGAGAATGAATCAAAAGTTACTACAAGCACTGTGGAAGATACTATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCGACACGAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGTCGAAACTGTCATAGATATTGGACCGCAGGTGGAACAATGAGAAACGTTGCTGTCGGTGCGGGGAGACGGAAGAACAAACACATAGGTTCACAGTATCGTAACATGATTGTAGCGTCCGGTGGAACTTCGACCGCAAATTTAGAAACCAATGACTCTATCCAACATGATAATGGTATTATCTTAAAATTCGGTCTAGATGTTGATGCAAGTGCTAACAATGGTATGGAAAATCGAGAAGAATCATCATCATTATGTGTATCTTCTGTGACCAACGGTTATACTCGAGGAACCGAGTTATCCGAATCCGAACAAAATAGGTCAAAACCTTTGCAGAGTTACCCGGCATCTTCATGGATAATTCCATTGAATCAAAGTTGGAACAATGTTACTTCCATGGTTCAATCTTCTATGCAGATGTATCCTACTACAATGCAGTGGTGTCACGCGCCAATGGTTGCGGTTACGAACATTTTCACACCAAACATTGGCTTGCAATATGTTCCTGGTTCATATGGAAATGGAAATGTTTCAATTGGTTCAAATGGTTGCATTTCACCTTCTTCATCAACTACTAGTAACAGTTTATGTTCAGGTAATGGATCACCAATCCTTGGCAAACACACTAGAGATTCTGTTTTGACTGATGAAGAGAAACCGGAAATGGAAATGCGTGTTTTCGCACCGAAGGCTCTTAGAATTGATGAAACAAATCTTGAATAG 1128 0.3954 MNGEGDMSVKDNKNSSIMLFGKKIPVPEYHTPATSQKGSQIPANSTTMNACSNSKQTRIEMPHTQNIEKSKNSSKEENESKVTTSTVEDTMETSSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRNVAVGAGRRKNKHIGSQYRNMIVASGGTSTANLETNDSIQHDNGIILKFGLDVDASANNGMENREESSSLCVSSVTNGYTRGTELSESEQNRSKPLQSYPASSWIIPLNQSWNNVTSMVQSSMQMYPTTMQWCHAPMVAVTNIFTPNIGLQYVPGSYGNGNVSIGSNGCISPSSSTTSNSLCSGNGSPILGKHTRDSVLTDEEKPEMEMRVFAPKALRIDETNLE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0411 375 MobiDBLite consensus disorder prediction 62 83 - -
Tpr5g0411 375 PANTHER CYCLIC DOF FACTOR 2 10 372 IPR045174 GO:0003700|GO:0006355
Tpr5g0411 375 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Tpr5g0411 375 MobiDBLite consensus disorder prediction 32 61 - -
Tpr5g0411 375 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Tpr5g0411 375 MobiDBLite consensus disorder prediction 32 99 - -
Tpr5g0411 375 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Tpr5g0411 375 PANTHER CYCLIC DOF FACTOR 3-LIKE 10 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0411 Tpr-Chr5 6323198 6325854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0411 76 371 C2C2-Dof Transcription Factor Family AT5G39660 35.650 2.23e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr5g0411 zf-Dof 9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0411 - - mtr:MTR_6g027460 462.225