Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0295 ATGGATCCACAAATTCTCTCCACCGCGGCAACCACCATTCCACATAATATCGTTCAACAAAATTATCCTGAATCGGTAGAGTCTTTATCATCGCCATCACCACCACAGCCACCACCACCACGATCACGTGAAATAACGAACGATGAGTCTTTACCTAATGTCCCCGGATCCAAGCTGCGCCTCATGTGCAGCTATGGAGGACACATTATGCCACGCCCGCATGATAAATCCTTGTGTTATGTCGGTGGTGACACGCGAATTGTGGTGGTTGATCGGAGTGCTTCCCTGAGAGATCTTTGTTCACGCCTTTCAAGAACAATTCTTAATGGAAGACCCTTTACTCTAAAATACCAGCTTCCAAATGAAGACCTTGATAACCTCATCACAGTAACATCAGATGAAGATCTTGATAATATGATCGAAGAATACGATCGAATAGCATCTTCATCAATGAAACCTTCTTCCTCAAGACTCAGAGTGTTTCTTTTCTTTACAAAACCAGATTCTACTCTTTCAATGGGATCTCTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAGTCCTCTCAAGGGGTGTTTCAGATTCAGAACGAGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGTAACAACTTGGAGTCTCAAGGTGTAGCAGCAGCAGAATCATTGAATATTCTTGAAGACATCAACAACAACAACAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTGCACCTGGTTCACCTATGCTTGAGAATAGTACATCTTCATCTTCTTTGTCTCCTTCTATAGCTAATTTACCTCCGATTCGTGTTCGTGTTGATGAAACCGGTGGTAATAAGCTTCAGCAAGAGAATAGAGTTGGAATGAAACAAGATGGTGGTTTTGTTGTTTCTTATGCTAATGTGGCTATGGCTGCAATTCCTTCAGCTGGAGTTGTGACTACTACTGCTACTGTTTCTGATGATGAAAGATCAGATTATGGAGGAGTAATTGGATCTCGAAAACCGCCTTTGCCATTGCAGCTTGTTCAACCTAGGACTAGTGGTGGGTTGAGTGTTCCTTCACCGGATTCAGTTACAAGTGATAGTAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATTGTTTATCATCAAGAACAAGTCCAACCTACAAGCATAGACAACAACAAAGCTCAAGAATCTAGTTACATGTTACAACCACAAATGGATCAAAATCAACAACTCCAACAACCACCACCACAACAACAACAATTTGCTCATTCCAACACCCACTATATCCACCATCCTACATCCACAAATCAAGTTCCAATCTCATCATACTACCAAGTTTACCCCCCACAATCATCACAACAACAACTTCACAATCCAATTGGTCAACAACAATATCCAATTTATGTAATGCCAATTGGATCAACACAACCATATAACATGACATTACAACATAGTATAAGTGACCCTAATGTTGTAGCTTCTAGTAGGTCAATAATACCTCAAAGTGGTACTCCACCAATTTACCCTAATAAATCACCTAACCCTAATGTGCCATCAAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTTTGCCTCAATTTCATCATCAACCACAACATCCTATTAATGTAGCAGCTCCTTCTAGTGGTACTAATTATGGTTATGAATATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACAACAAACTAATGCTCCATTGGTTACTCAGTATCAATCCATGACACCAGCAGCTGCTGCAGCAGCATTATCAGATGCATCCAATCAATTTCCGGCAGATAATGTTCAGCAGCAAAATAGAACTTCGCAGCCGGTATAA 1902 0.398 MDPQILSTAATTIPHNIVQQNYPESVESLSSPSPPQPPPPRSREITNDESLPNVPGSKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSSMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGVLSRGVSDSERDSFVNLDNVPASDSSNNLESQGVAAAESLNILEDINNNNNNNVKNVFDVVNVAPGSPMLENSTSSSSLSPSIANLPPIRVRVDETGGNKLQQENRVGMKQDGGFVVSYANVAMAAIPSAGVVTTTATVSDDERSDYGGVIGSRKPPLPLQLVQPRTSGGLSVPSPDSVTSDSSSIASTNSFSKIVYHQEQVQPTSIDNNKAQESSYMLQPQMDQNQQLQQPPPQQQQFAHSNTHYIHHPTSTNQVPISSYYQVYPPQSSQQQLHNPIGQQQYPIYVMPIGSTQPYNMTLQHSISDPNVVASSRSIIPQSGTPPIYPNKSPNPNVPSNSTFVQVPSNQFQQQYVGLPQFHHQPQHPINVAAPSSGTNYGYEYGGNVEGQVYYTQQQTNAPLVTQYQSMTPAAAAAALSDASNQFPADNVQQQNRTSQPV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0295 633 SUPERFAMILY CAD & PB1 domains 74 174 - -
Tpr5g0295 633 MobiDBLite consensus disorder prediction 360 379 - -
Tpr5g0295 633 Pfam PB1 domain 74 163 IPR000270 GO:0005515
Tpr5g0295 633 MobiDBLite consensus disorder prediction 611 633 - -
Tpr5g0295 633 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 626 - -
Tpr5g0295 633 MobiDBLite consensus disorder prediction 21 53 - -
Tpr5g0295 633 CDD PB1_UP2 62 163 - -
Tpr5g0295 633 Gene3D - 78 164 - -
Tpr5g0295 633 PANTHER OS05G0427100 PROTEIN-RELATED 1 626 - -
Tpr5g0295 633 MobiDBLite consensus disorder prediction 615 633 - -
Tpr5g0295 633 ProSiteProfiles PB1 domain profile. 58 163 IPR000270 GO:0005515
Tpr5g0295 633 SMART PB1_new 73 163 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0295 Tpr-Chr5 4384477 4387551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0295 58 192 MAP Kinase Kinase Kinase AT5G57610 44.853 1.35e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0267 3 3073799 3075283 Tpr5g0295 5 4384477 4387551 ECH
Tpr1g0343 1 3003444 3006387 Tpr5g0295 5 4384477 4387551 ECH
Tpr5g0295 5 4384477 4387551 Tpr5g0295 5 4384477 4387551 ECH