Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4391 ATGATTAGAGTTTGGATTGTACTGTTGATGCTTGTCTCCAATTTGTTCTCTTCAAGTGTGGTTGGCTTGGATAATTCCACAGTACCTCCAGTTGTAAATATTGGGGTTCTCTACTCTTTCAATACCAGTGTTGGTAGAATAGTGAAAATTGCGGTAGAAGCTGCGGTTGCTGATATAAATTCTGATCCTTCTATTCTTGGTAATACTAAGTTGAATCTCTCACTGCAAGAAGATTCCAAATATAGAGGCTTTTTGAGCATTGCTGAGGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCACAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAACGAACTCCAGGTTCCTCTGTTATCATTTTCAGCAACTGATCCTACTCTTTCTTCGCTTCAATTCCCGTTCTTCATTAGAACTGCCTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATTATAAGCCACTTTGGTTGGAGAGAGGTTATCGCAGTCTATGGTGATGACGACCATGGGAGGAATGGAATTGGTGGGTTAGGGGATAAGCTTGCTGAGAGACGTTGCAAGATCTCGTTTAAAGCACCGATGCCTCCTGAGGCAACAAGTGAGGAGATTACTGATGTGCTTGTTCAGGTGGCGTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGCGTGGCAAAGTCTCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTTTATTGACATAGATAGTCCTCTCTCTTCAGAAGAAATGGATAACATGCAAGGAGTTATTGCACTAAGAATGTACATACCAGATTCAAAGCTCAAAAGATCGTTCTTTTCTAGGTGGACGAATTTGACTAGTGGAAAGGAGGGAAACGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCTTATGATACTGTTTACGTTCTTGCTCGTGCCCTTGATACATTTTTCAAACAAGGGAACCGAATTACATTTTCGCCCGATCCAAAGATATCACAAATAAGTGGAGACAGCTTGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCAGTTGCGCAAAAGTATTCACGAGGTTAACATGACTGGTGTAACAGGTCCATTCAGGTATACATCTGATGGAAACCTTGCTAATCCAGCATATGAGATCATCAATGTGATTGGAACAGGGACTCGCAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAATTGTTCCTCCAGAAACACTTTATTCAAAACCACCTAATCGTTCCATTGAAAACCAAAAGCTACTCACTGTGTTTTGGCCAGGTGAAACAACCCAGAGACCTCGCGGTTGGGTTTTTCCAAACAATGGAAAGATGTTAAAAATCGGAGTACCGAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCCACCGACACGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCCTATAAGTTTATTCCATATGGTGATGGTCAAAGTAATCCTAGTAACACCGAGCTTGTGCGCCTGATCACTACCGGGGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATAGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTCTGACACCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTCTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGCCACAATTTTATGGTTTAGTTTTTCAACTATGTTCTTCGCTCACAGGGAAAATACTGTAAGCACTCTTGGTCGTTTTGTGCTACTTATATGGCTATTTGTAGTACTAATAATCAACTCGAGTTACACTGCAAGCCTGACGTCAATCCTCACAGTGCAACAACTTTCTTCACCTATAAAAGGAATTGAAAGTTTAGTAAATAGCAAAGAGCCCATTGGTTACATGCAGGGTTCTTTTGCCCGGTCATATTTAATTGACGAAATCGGTATTCATGAATCCAGACTAGTTCCTCTAAAAACACCTGAAGAAACTATGAAAGCACTGGAGAAAGGTCCCCAAAAGGGTGGTGTTGCTGCATACATTAACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTTCTATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATATGCCTTTCCACCAGACTCACCATTAGCGGTTGACCTGTCAACTGCCATTTTAGAGTTGGCAGAAAATGGAGATTTACAAAGAATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCGATCACAAGGTGCAAAGCTTGAAGTGGATAGACTCAATCTCAAAAGCTTTTGGGGCCTCTATCTAGTTTGCGGTTTGGCATGTTTCCTAGCTCTCCTAATATATCTTATTCAGACCATGAGGCAGTACAAGAAACACAATCCAGAGGAACTTGAGTCTTCTGGCCATGGTTCTGGATCTTCACGTCTGCGGACTTTCCTTTCATTTGTAGATGAAAAAGAAGATGCAGTTAAGAGCCGCAAGAGAAGGCAAATGGAGAGGATGTCATATAGAAGCACAAGTGAGGTTGGATCCAACATCATCTCCAATAAAGATTTGTCTCGATCATCGACATCATTAAACAGAATTGATTCTGCTAATGAAGTCTGA 2820 0.4149 MIRVWIVLLMLVSNLFSSSVVGLDNSTVPPVVNIGVLYSFNTSVGRIVKIAVEAAVADINSDPSILGNTKLNLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFNDIFQMTAIADIISHFGWREVIAVYGDDDHGRNGIGGLGDKLAERRCKISFKAPMPPEATSEEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMQNGYVWIATTFLTSFIDIDSPLSSEEMDNMQGVIALRMYIPDSKLKRSFFSRWTNLTSGKEGNGPLGLSTYGIFAYDTVYVLARALDTFFKQGNRITFSPDPKISQISGDSLHLDAVKIFNEGNQLRKSIHEVNMTGVTGPFRYTSDGNLANPAYEIINVIGTGTRRIGYWSNYSGLSIVPPETLYSKPPNRSIENQKLLTVFWPGETTQRPRGWVFPNNGKMLKIGVPKRVSYREFVSQVQSTDTFKGFCIDVFLSAVNLLPYAVPYKFIPYGDGQSNPSNTELVRLITTGVFDAAVGDITITTERTRMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYMQGSFARSYLIDEIGIHESRLVPLKTPEETMKALEKGPQKGGVAAYINERAYIELFLSSRCDFSIVGQEFTRNGWGYAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACRSQGAKLEVDRLNLKSFWGLYLVCGLACFLALLIYLIQTMRQYKKHNPEELESSGHGSGSSRLRTFLSFVDEKEDAVKSRKRRQMERMSYRSTSEVGSNIISNKDLSRSSTSLNRIDSANEV* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4391 939 CDD GluR_Plant 470 812 - -
Tpr4g4391 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 929 - -
Tpr4g4391 939 Gene3D - 148 425 - -
Tpr4g4391 939 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Tpr4g4391 939 Pfam Bacterial extracellular solute-binding proteins, family 3 494 812 IPR001638 -
Tpr4g4391 939 Gene3D - 50 400 - -
Tpr4g4391 939 Gene3D - 782 812 - -
Tpr4g4391 939 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Tpr4g4391 939 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Tpr4g4391 939 MobiDBLite consensus disorder prediction 894 939 - -
Tpr4g4391 939 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Tpr4g4391 939 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Tpr4g4391 939 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Tpr4g4391 939 Gene3D - 470 582 - -
Tpr4g4391 939 Gene3D - 583 710 - -
Tpr4g4391 939 PANTHER GLUTAMATE RECEPTOR 13 929 - -
Tpr4g4391 939 PIRSF IGluLR_plant 1 939 IPR017103 -
Tpr4g4391 939 MobiDBLite consensus disorder prediction 907 939 - -
Tpr4g4391 939 Gene3D - 730 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4391 Tpr-Chr4 51226063 51231626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4391 5 913 Ion Channels AT3G51480 58.817 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4391 K05387 - gmx:100788917 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1217 2 14235943 14241017 Tpr4g4391 4 51226063 51231626 PCT