Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4231 ATGGAAACTACCTCATTTTCCAAATGGCTCTTCACATTTTGCTTTGTACTTTGCTTAATCTCTCAATTCATTCACTCTACTGTCACTTATGACAGAAAAGCAATTCTCATCAATGGACAAAGAAGAATCCTTTTTTCTGGTTCTATACATTATCCTAGAAGTACCCCTGATATGTGGGAAGATCTGATTCAAAAGTCTAAAGAAGGTGGTCTTGATGTGATTGAAACTTATGTCTTCTGGAATGTTCATGAACCTTCTCAGGGCAATTACAATTTTGAAGGAAGATATGATCTAGTGAAATTCATAAAGACAATTCAGAAAGCTGGACTCTATGCTCATCTTCGCATTGGACCTTATGTTTGTGCTGAATGGAATTTTGGAGGATTTCCAGTTTGGTTGAAGTATGTTCCAGGCATTAGCTTTAGAACAGACAATGAACCTTTCAAGAAAGAGATGCAAAGATTCACTGAGAAGATTGTTGGAATGATGAAGAGTGACCACCTCTTTGAATCACAGGGTGGCCCTATAATTCTCTCTCAGATTGAGAATGAATTTGGACCGCAGAGTAAGATACAAGGTGCTTCTGGCCAAAATTATGTGAATTGGGCAGCTAAAATGGCTGTAGAGATGGGAACTGGAGTTCCTTGGATAATGTGTAAGGAAGATGATGCACCAGATCCAGTGATCAACACATGTAATGGCTTCTATTGCGACAAGTTTACTCCAAATAGACCCTATAAGCCTACAATGTGGACTGAAGCTTGGAGTGGATGGTTTACAGAATTTGGAGGTCCAACTCACAAACGACCTGTGCAAGATTTAGCATTTGCAGTTGCTCGATTTGTAACACGAGGAGGGTCATTTGTAAACTACTATATGTATCATGGAGGAACCAATTTCGGGCGAACAGCTGGAGGTCCTTTTGTAGCTACCAGTTATGACTATGATGCTCCACTAGATGAATATGGTTTGATTAGGCAGCCAAAATATGGTCATCTAAAGGAGCTTCATAAAGCTATCAAGATGTGTGAGCGAGCTTTGGTTTCAACCGACCCAATTATTACTTCATTAGGGAGCTCCCAGCAGGCTCATGTATACTCTACAGAATCAGGAGATTGTGCAGCTTTTCTCTCAAACTATGATTCAAAATCCCCTGCTAAAGTGCTGTTCAATAATATGCATTATAGTTTAGCCCCTTGGTCCGTCAGCATCCTTCCCGATTGTAGAAATGCCGTCTTTAATACAGCAAAAATTGGAGTGCAAACATCGCAAATGCAAATGTTACCAACAAATACTCATATGTTCTCGTGGGAGAGTTTCGATGAAGATATTTCTTCTCTGGACGATAGCTACTCACTCAGTGCTCCTGGTCTTCTGGAACAGATAAATGTAACGCGGGATGCAAGTGATTATCTTTGGTATATAACTAGCATTGATATAGGTTCATCCGAATCCTTTCTACGTGGAGGCGAACTCCCAACTCTTATTGTTCAGTCCACAGGCCATGCTGTACATGTTTTCATCAATGGTCAACTTTCTGGTTCTACTTATGGAACTCGGGAGTATAGGAGATTCATGCATATTGGCAAGGTAAACCTTCGTGCTGGAACAAACAGAATAGCTCTGCTCAGTGTTGCAATCGGACTTCCTAATGTGGGAGTACATTATGAGACATGGAGCACAGGAATCCTAGGTCCCGTTGCACTCCACGGACTCAACCAAGGAAAATGGGACTTGTCCCGGCAGAGATGGACTTATCAGGTTGGACTGAAAGGCGAGGCCATGAATCTTGCATCTCCTAATAGTATCTCATCAGTTGAGTGGATGCAGTCAGCAATAGTTGTGCAAAGAAATCAACCATTGACATGGCACAAGACTAATTTTGATGCACCTGAAGGAGATGAACCACTGGCGTTGGATATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAAAGTATTGGAAGATATTGGACTGCATTTGCTAATGGTAATTGCAATGACTGTAACTATGAAGGGTCGTTTAGGCCCGAAAAGTGCCAACTCGGTTGTGGCCAACCAACTCAACGATGGTACCATGTGCCTCGATCATGGTTGAAACCAACTCAAAATTTATTAGTTATTTTTGAGGAACTCGGTGGAGATCCTTCAAAGATTTCACTTGTAAAGAGATCAGTGAGCAGTGTATGCGCTGATGTGTCAGAGTACCACCCAAATATTAAGAATTGGCACATTGACAGCTATGGTAAGTCTGAAGAATTCCGTCCACCAAAGGTTCACTTGCATTGTAGCCCCGGCCAAACCATCTCTTCCATTAAATTCGCAAGCTTTGGAACTCCTCTCGGGACTTGTGGGAATTACGTGCAAGGAGCTTGTCATTCCCCTACATCCTATGCCATTTTAGAGAAGAAATGTGTAGGGAAGCCAAGATGCATAGTTACTGTATCAAATAGCAATTTCGGGAAAGACCCATGTCCAAGGGTGATGAAGCGGTTATCAGTTGAAGCTGTTTGCGCTCCAGCTACTACGAATTAA 2541 0.4179 METTSFSKWLFTFCFVLCLISQFIHSTVTYDRKAILINGQRRILFSGSIHYPRSTPDMWEDLIQKSKEGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVKFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKKEMQRFTEKIVGMMKSDHLFESQGGPIILSQIENEFGPQSKIQGASGQNYVNWAAKMAVEMGTGVPWIMCKEDDAPDPVINTCNGFYCDKFTPNRPYKPTMWTEAWSGWFTEFGGPTHKRPVQDLAFAVARFVTRGGSFVNYYMYHGGTNFGRTAGGPFVATSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCERALVSTDPIITSLGSSQQAHVYSTESGDCAAFLSNYDSKSPAKVLFNNMHYSLAPWSVSILPDCRNAVFNTAKIGVQTSQMQMLPTNTHMFSWESFDEDISSLDDSYSLSAPGLLEQINVTRDASDYLWYITSIDIGSSESFLRGGELPTLIVQSTGHAVHVFINGQLSGSTYGTREYRRFMHIGKVNLRAGTNRIALLSVAIGLPNVGVHYETWSTGILGPVALHGLNQGKWDLSRQRWTYQVGLKGEAMNLASPNSISSVEWMQSAIVVQRNQPLTWHKTNFDAPEGDEPLALDMEGMGKGQIWINGQSIGRYWTAFANGNCNDCNYEGSFRPEKCQLGCGQPTQRWYHVPRSWLKPTQNLLVIFEELGGDPSKISLVKRSVSSVCADVSEYHPNIKNWHIDSYGKSEEFRPPKVHLHCSPGQTISSIKFASFGTPLGTCGNYVQGACHSPTSYAILEKKCVGKPRCIVTVSNSNFGKDPCPRVMKRLSVEAVCAPATTN* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 PANTHER BETA-GALACTOSIDASE RELATED 5 836 IPR001944 GO:0004553|GO:0005975
Tpr4g4231 846 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Tpr4g4231 846 Pfam Galactose binding lectin domain 763 840 IPR000922 GO:0030246
Tpr4g4231 846 ProSiteProfiles SUEL-type lectin domain profile. 759 841 IPR000922 GO:0030246
Tpr4g4231 846 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Tpr4g4231 846 Gene3D - 591 733 - -
Tpr4g4231 846 SUPERFAMILY Galactose-binding domain-like 583 747 IPR008979 -
Tpr4g4231 846 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Tpr4g4231 846 PANTHER BETA-GALACTOSIDASE 3 5 836 - -
Tpr4g4231 846 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Tpr4g4231 846 Gene3D Glycosidases 23 344 - -
Tpr4g4231 846 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Tpr4g4231 846 Gene3D - 755 846 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4231 Tpr-Chr4 49438536 49445046 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3820 1 42189668 42195890 Tpr4g4231 4 49438536 49445046 ECH
Tpr7g0273 7 2227539 2232922 Tpr4g4231 4 49438536 49445046 ECH
Tpr4g4231 4 49438536 49445046 Tpr4g4231 4 49438536 49445046 ECH