Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4097 ATGCCATCTTCAGACTCCGGTGAGAGCCGCCGATCAACCAAACCACAAAACCGTCCAGGTCCAGGAGCACCTGCACCTGAGCAAGAGAATCTACCATGTCCTCGTTGTGATTCAACCAACACTAAATTCTGTTACTACAACAACTACAACTACTCTCAGCCACGCTATTTCTGTAAAGGTTGTCGCCGCTACTGGACTCAAGGAGGTACTCTCCGTGACATCCCCGTCGGCGGAGGTAACCGCAAAAACGCCAAGCGCTCCAGAACTCAGCACATTGCGGTGACTTCCTCTTCTTCTTCGTCAGCCGTAACTTCTGCACCGGAGCACCGCCACTATCAATCAATGACACCCATCTCCGCCGTACAAGGAGGTTCTTTTCCGTACGGTGGAAATGTTGACGATGAAGGAAAACAGAACACGAGTGTTTCTGGGAGCTTCACTTCATTGCTGAACAACAGCAACACTCAAGGGAACTTTCTTGCTTTAGGTGGATTTGGATTTGGGCTTGGACAAGGGCTTGAAGAAATGAGCTTTGGAATTGGGAGATCCGGTTGGGGTTTTCCAGGAATGGTGGCTGGATCAAACATTGGTGGTGTGCCAGTTGTGCCTTCAAACTCATGGCAGTTAGAAGGTGGTGAAGGTGGTTTTGTTGGTGGTGATTACTATTTCTCTTGGCCTGGACTTGCAATTTCAACACCAGTAAATGGACTCAAATGA 717 0.4895 MPSSDSGESRRSTKPQNRPGPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRYFCKGCRRYWTQGGTLRDIPVGGGNRKNAKRSRTQHIAVTSSSSSSAVTSAPEHRHYQSMTPISAVQGGSFPYGGNVDDEGKQNTSVSGSFTSLLNNSNTQGNFLALGGFGFGLGQGLEEMSFGIGRSGWGFPGMVAGSNIGGVPVVPSNSWQLEGGEGGFVGGDYYFSWPGLAISTPVNGLK* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4097 238 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Tpr4g4097 238 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 235 IPR045174 GO:0003700|GO:0006355
Tpr4g4097 238 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Tpr4g4097 238 MobiDBLite consensus disorder prediction 1 16 - -
Tpr4g4097 238 MobiDBLite consensus disorder prediction 1 32 - -
Tpr4g4097 238 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 235 - -
Tpr4g4097 238 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4097 Tpr-Chr4 47790333 47791797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4097 1 238 C2C2-Dof Transcription Factor Family AT3G50410 47.860 2.25e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr4g4097 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4097 - - cam:101488684 347.436