Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4085 ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTTCCCTCTTAGCAAATGAAAGAAACTACTCTTCCATTAATGGAGGAGGAGGAGGAGGAGTTGGAGGAGTTTTACTTCAACAACCAACTACTCAATCTCCTTCTACTTCTCCATGTCCATCTTCCACAACCACACCCACCACCGCCACCACCACACCAACCGCCACCACAACATCAGAAAACCAACAACATCTGAGGTGTCCAAGATGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCACGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGCGGCGCTTTACGCAACGTCCCCATCGGAGGTGGCTGCCGGAAAAACAAAAGCATCGGCATGTCAAACACCGCGGCAAAAACAACAACAAACAAGATGAAAACAGTTGCTTCTGAGTTTTTCAGGTCAGCAAGTAGTCAGGGGTTCGATCACGTGGTAACACCACCAAGTCAAATCCTTTGGGGTTCTCCTCAAAATTCTCATATACTTTCTTTGTTTAGATCTAGTCAAAACCAAAGCCCTAACCCTAATCATGTTAAGGAAGAAGGAAATAATAGCTTATTAGGGTCCCATATTTCTCACATGATGACTTCTCAACCGTTGATTTCATCAAATGTTTATGATGATGGTGTTGGACATGTTTTATGCAACCCATTTTGGAGAAACAATCATGAAAATCAAACTCAACAACTACAAAATAATGGTGGATTTGTACTTGGGGAACAACAACAACAACATCATCAAAACAGTGGAATCCAAGAACTTTACCAGAAGCTAAGGTCATCAACAACATCATCATCAGGTAATAATTATTGCAGTGAGATTGCAGCTTCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCAAATCCATCTTCTATATCAAATATTTTGGAAACAACTTCAGTTACTGGTGGTGAATTAGGGTATTGGAATCCAATTCCAACTCTTACTTGGTCTGATCTTCCAACCACCAATGGTGCATATCCATAA 1050 0.4162 MIQELFGNGASASLLANERNYSSINGGGGGGVGGVLLQQPTTQSPSTSPCPSSTTTPTTATTTPTATTTSENQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGMSNTAAKTTTNKMKTVASEFFRSASSQGFDHVVTPPSQILWGSPQNSHILSLFRSSQNQSPNPNHVKEEGNNSLLGSHISHMMTSQPLISSNVYDDGVGHVLCNPFWRNNHENQTQQLQNNGGFVLGEQQQQHHQNSGIQELYQKLRSSTTSSSGNNYCSEIAASSPTVLLGNVASNPSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNGAYP* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4085 349 MobiDBLite consensus disorder prediction 40 74 - -
Tpr4g4085 349 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Tpr4g4085 349 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 29 347 - -
Tpr4g4085 349 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Tpr4g4085 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 347 IPR045174 GO:0003700|GO:0006355
Tpr4g4085 349 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4085 Tpr-Chr4 47681814 47683703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4085 44 140 C2C2-Dof Transcription Factor Family AT5G65590 58.763 8.84e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr4g4085 zf-Dof 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4085 - - gmx:778100 342.043