Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4001 ATGGGATCGATCACCATAACCTCCTTGATCTTCTTTTCTTTGATCACTTTGTCACTAGCATTGGACATGTCCATGCGTAGGAACAAGGATGTTATGAACATGTACGAGGAATGGTTGGTAAAACATCAAAAAGTGTATAATGGGTTAGGAGAGAAAGACAAAAGGTTTGAGATTTTTAAGGATAATTTAGGATTTATTGATGAACACAATGCTCAAAATAACACATACAAAGTTGGGTTGAACAAATTTGCGGATATGACTAATGAAGAATATCGTGACATGTATTTGGGCACGAGGAATGATGCCAAACGTAGAGTCATGAAAAACAAGATCACCACCAGTCACCGGTATGCTTATAGTTCCGGTGATCGGTTGCCGGTGCATGTTGATTGGAGATCGAAAGGTGCCGTTTCTCATATCAAAGATCAAGGAAGTTGTGGAAGTTGCTGGGCATTCTCAACAATTGCCACAGTGGAAGCTATAAACAAGATAGTGACAGGGGAGCTTGTGTCCTTATCTGAACAAGAGCTTGTGGACTGTGACAGAGCCTACAATGAAGGGTGCAATGGTGGTCTCATGGACTATGCCTTTGAGTTCATAATTCAAAATGGTGGCATTGACACTGACCAAGACTATCCATACAAGGGATTTGAGGGTAGATGTGATCCAACAAGGAAAAATGCAAAGGTAGTGACTATTGATGGATATGAAGATGTTCCATCATATAATGAAAATGCACTAAAGAAAGCTGTGGCTCATCAACCTGTTAGTGTTGCTATTGAGGCCTCTGGCAGGGCATTGCAACTCTATCAATCGGGTGTATTTACTGGTAAATGTGGAACAAACTTGGATCATGGTGTAGTAGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTGAGAAACTCATGGGGCACAAACTGGGGTGAAGATGGTTACTTCAAGTTAGAGCGTAATGTGAAAAGCACTTCTACAGGAAAGTGTGGAATCTCAATTGAAGCCTCATACCCTGTGAAGTATGCTCAAAACTCTGCAGTCACTAATTCAGCTTATGAAAACAATGAAGTGTTAGTTAGCAGTGCTTGA 1095 0.4064 MGSITITSLIFFSLITLSLALDMSMRRNKDVMNMYEEWLVKHQKVYNGLGEKDKRFEIFKDNLGFIDEHNAQNNTYKVGLNKFADMTNEEYRDMYLGTRNDAKRRVMKNKITTSHRYAYSSGDRLPVHVDWRSKGAVSHIKDQGSCGSCWAFSTIATVEAINKIVTGELVSLSEQELVDCDRAYNEGCNGGLMDYAFEFIIQNGGIDTDQDYPYKGFEGRCDPTRKNAKVVTIDGYEDVPSYNENALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTNLDHGVVVVGYGSENGVDYWLVRNSWGTNWGEDGYFKLERNVKSTSTGKCGISIEASYPVKYAQNSAVTNSAYENNEVLVSSA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4001 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Tpr4g4001 364 Pfam Cathepsin propeptide inhibitor domain (I29) 35 91 IPR013201 -
Tpr4g4001 364 PANTHER CYSTEINE PROTEASE 19 349 - -
Tpr4g4001 364 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Tpr4g4001 364 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Tpr4g4001 364 Gene3D Cysteine proteinases 18 343 - -
Tpr4g4001 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Tpr4g4001 364 CDD Peptidase_C1A 126 340 IPR039417 -
Tpr4g4001 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Tpr4g4001 364 SMART Inhibitor_I29_2 35 91 IPR013201 -
Tpr4g4001 364 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Tpr4g4001 364 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Tpr4g4001 364 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Tpr4g4001 364 SUPERFAMILY Cysteine proteinases 28 341 IPR038765 -
Tpr4g4001 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4001 Tpr-Chr4 46555813 46559596 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3657 1 40700788 40704952 Tpr4g4001 4 46555813 46559596 ECH
Tpr4g4001 4 46555813 46559596 Tpr4g4001 4 46555813 46559596 ECH