Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2591 ATGGGAAGAAGACCTGCAAGGTGTTACCGTCAAATTAAAAACAAGCCATACCCTAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTCGGTATGAAAAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTTGTCAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCTTGCAACAAATACATGGCTAAATTCGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTTCATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACAGGTATGAGAGGTGCTTTTGGAAAGCCACAAGGTGTTTGCGCTAGAGTGGCTATTGGACAGGTCCTTCTTTCAGTCCGCTGCAAGGACAGCAACAGCCACCATGCACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAGATTGACCGAAATGATTATCTGAAATTAAAGTCAGTGAACAGAATTTTGGCTGATGGTGTGAATGCTAAGCTCCTCGGATGTCATGGACCATTGTCTAACCGTCAACCTGGAAGAGCATTCATTAATGCCAGCTGTAATGAGGAAGCTTAG 675 0.4474 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKIDRNDYLKLKSVNRILADGVNAKLLGCHGPLSNRQPGRAFINASCNEEA* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2591 224 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr4g2591 224 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Tpr4g2591 224 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2591 Tpr-Chr4 28484260 28486774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2591 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.845 3.27e-142 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2591 K02866 - rcu:8283224 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2591 4 28484260 28486774 Tpr3g2984 3 32273094 32274726 PCT