Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1961 ATGCCTTTCAAGAGATTCGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGAAAAGACTATGGTAGACTCGTTGTTATCGTTGATGTCATCGACCAAACCAGAGCTCTTGTTGATGCTCCTGACATGGAGAGATCTCCGATAAATTTCAAGAGGCTCTCACTCACTGACATCAAGATTGAGATTAAGAGAGTCCCCAAGAAGAAGGATCTCATCAAAGCCATGGAAGCTGCAGATGTTAAGAACAAGTGGGAAAAGAGCTCGTGGGGCAGGAAATTGATTGTGAGGAAGAGAAGGGCAGCCCTCAATGACTTTGACAGGTTCAAGATCATGTTGGCAAAGATCAAGAGGGCAGCTGTTGTAAGGCAAGAACTTGCTAAGTTGAAGAAGACTGCAGCTTAG 402 0.4453 MPFKRFVEIGRVAQINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDIKIEIKRVPKKKDLIKAMEAADVKNKWEKSSWGRKLIVRKRRAALNDFDRFKIMLAKIKRAAVVRQELAKLKKTAA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1961 133 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Tpr4g1961 133 Gene3D - 1 84 IPR014722 -
Tpr4g1961 133 PANTHER RIBOSOMAL PROTEIN L14, PUTATIVE-RELATED 1 133 - -
Tpr4g1961 133 Gene3D - 92 127 - -
Tpr4g1961 133 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Tpr4g1961 133 PANTHER 60S RIBOSOMAL PROTEIN L14 1 133 IPR039660 GO:0003723|GO:0003735
Tpr4g1961 133 CDD KOW_RPL14 7 79 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1961 Tpr-Chr4 20385010 20386653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1961 1 133 Cytoplasmic Ribosomal Protein Gene Family AT2G20450 82.707 3.08e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1961 K02875 - gmx:100499889 239.965