Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1747 ATGGGGATGGATCCTTCTAATGGACAAAACCAGCAAATGTCTAACCAGTCATTGGAGAACATGATAACTTGTTCTAAAACACAAGAAGACAAAAAGCCAAAACCTCAACCAGAAGCACTAAAATGTCCAAGATGTGACTCAAGCAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAATCATGTAGAAGATATTGGACAAAAGGAGGTACACTTAGAAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCAACATCAAAAAGAACTCAAGATCAAACATTTCCAACAAATCCAAATAATCCACTCACTTGTTTCCCTTCATTATCTTATGATTCCAATGATCTCACACTTGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGAACATGAACATGATTTTTCTTCAATTTTAGGAAACCACACAAACATTAACACAAACACCTCATGTGCAATTCTTAACAACCATGGTATGAACAATTCTTCAAACAACCATGGATTCTTTGAAGCACTAATGGGATCTCAGAACAATGTTCAGAATCTTTACTACAACACTGGGGAAGTAGATAATGGCAATGCTAATGGTGAAATGATGTTACCCTATGATCATGAAATGAGCATTGCAACTACTCAAGCTGTGACAGTTACTACAATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTGGGTTTTCCATGGCAGTTCAATAATTCTGACACAAACATGGCTGAAATTGACCATTCAGGAAGAGGTGGTTGGAATGGTCTCAATTCATCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 870 0.3701 MGMDPSNGQNQQMSNQSLENMITCSKTQEDKKPKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSTSKRTQDQTFPTNPNNPLTCFPSLSYDSNDLTLALARLQKGHLGFEHEHDFSSILGNHTNINTNTSCAILNNHGMNNSSNNHGFFEALMGSQNNVQNLYYNTGEVDNGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNSDTNMAEIDHSGRGGWNGLNSSWHGLLNSPLM* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1747 289 MobiDBLite consensus disorder prediction 1 24 - -
Tpr4g1747 289 MobiDBLite consensus disorder prediction 1 40 - -
Tpr4g1747 289 MobiDBLite consensus disorder prediction 99 113 - -
Tpr4g1747 289 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 9 288 - -
Tpr4g1747 289 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Tpr4g1747 289 MobiDBLite consensus disorder prediction 25 39 - -
Tpr4g1747 289 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Tpr4g1747 289 MobiDBLite consensus disorder prediction 85 113 - -
Tpr4g1747 289 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Tpr4g1747 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 288 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1747 Tpr-Chr4 18014968 18017203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1747 3 289 C2C2-Dof Transcription Factor Family AT2G28510 40.506 1.47e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr4g1747 zf-Dof 8.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1747 - - gmx:100799737 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1747 4 18014968 18017203 Tpr4g1747 4 18014968 18017203 ECH
Tpr7g4348 7 52243526 52245915 Tpr4g1747 4 18014968 18017203 PCT