Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1280 ATGTATCCACAAACTCCATTAATTATCACATTTTTCATTATCCTCCTATTAGTCTTATGTAATGGCTCTTACATAGTGGAACCGCTTTATCATCAAACAAATTCTAAATACTACTACCATGTACATGATGGTAGATTGATCAAAACAAAACATCAACATTTTGGTCACATAACAAGAACCAATAGAGATACCCTTTTTTCTTCAAAGTCTAAAGTAACGGTTAATGTTGATGATTTTGGAGCCAAAGGAGATGGAAGAGATGATAGAGAGGCATTTAAGAAGGCATGGAATGAAGCATGTTCTAAAGGAGCTATTCTTGTGGTACCAAATAGGATATATCGTCTCAAACCAATAACTTTTTCAGGTCCATGTCAACCAAATACTGCCTTTATGCTCTATGGAACAATTGAGGCATGGCCTCAAATGTCAGCATATGAAGAAGATAAGCAGCACTGGATTGTGTTTGATAGTGTCTCAAATTTTAAAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAAAATTCTTGCAAATATTCCAACAATAATAAACTTCCATGCAATGATGAACTAAGACCAACCGCTGTGACATTCTATGATTGCAAGAATTTGAGAGTCAAAAATCTAAGTTTCAAAGATGCACAACAAATGCATGTAGCATTTGAGAGATGCTTCAATGTGTTTGTTTCCAATCTTGTTATTAGAGCACCAGAGGATAGCCCTAACACTGATGGAATTCATGTGGCAGAAACACAAAATATTGACATAACAAATTCTCATATTGGGACAGGCGATGATTGTATTTCAATAGTTAGTGGATCCAAATTTGTGCGAGCTACAGATATTACCTGTGGACCTGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAAATCAGAAGCTGAAGTTTCCAATGTGATAGTGAACAGAGCCACCTTAACAGGAACAACAAATGGAGTGAGAATAAAAACTTGGCAGGGTGGTTCAGGTTATGCAAGAAACATCAAATTTATGAACATAGAAATGCAAAATGTGACAAATCCAATAATCATAGACCAATACTATTGTGATCAAACACAACCATGTCAAGAACAGGGCAGGGCCGTGCAATTAAGCCATGTTTTGTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTTGCTATAAAATTTGACTGCAGCAGAAGCATTCCTTGTAGAGAAATTTACTTGCATGATGTGATTTTAGAACCAGAAGGTGGTGGTAGTGGAACTACTGCTACATGTGAAAATGTTGGATATGTGAATAGTGGGAAGTTTTATCCTCAATGCTCTCCTTGA 1335 0.37 MYPQTPLIITFFIILLLVLCNGSYIVEPLYHQTNSKYYYHVHDGRLIKTKHQHFGHITRTNRDTLFSSKSKVTVNVDDFGAKGDGRDDREAFKKAWNEACSKGAILVVPNRIYRLKPITFSGPCQPNTAFMLYGTIEAWPQMSAYEEDKQHWIVFDSVSNFKVDGGGTFNGNGKKWWQNSCKYSNNNKLPCNDELRPTAVTFYDCKNLRVKNLSFKDAQQMHVAFERCFNVFVSNLVIRAPEDSPNTDGIHVAETQNIDITNSHIGTGDDCISIVSGSKFVRATDITCGPGHGISIGSLGADKSEAEVSNVIVNRATLTGTTNGVRIKTWQGGSGYARNIKFMNIEMQNVTNPIIIDQYYCDQTQPCQEQGRAVQLSHVLYQNIRGTSASEVAIKFDCSRSIPCREIYLHDVILEPEGGGSGTTATCENVGYVNSGKFYPQCSP* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1280 444 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Tpr4g1280 444 Gene3D - 58 440 IPR012334 -
Tpr4g1280 444 PANTHER POLYGALACTURONASE 10 443 - -
Tpr4g1280 444 PANTHER - 10 443 - -
Tpr4g1280 444 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Tpr4g1280 444 SMART pbh1 255 276 IPR006626 -
Tpr4g1280 444 SMART pbh1 337 358 IPR006626 -
Tpr4g1280 444 SMART pbh1 308 329 IPR006626 -
Tpr4g1280 444 SMART pbh1 228 254 IPR006626 -
Tpr4g1280 444 SUPERFAMILY Pectin lyase-like 70 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1280 Tpr-Chr4 12385658 12390026 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1280 4 12385658 12390026 Tpr3g4553 3 50675713 50681463 PCT