Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0901 ATGACTTTTACATCCATACAAGCAGCTTATCTTGATGCAGCCAACTGGCAACAACATGAGCAGCAACAGAATCATCTTCAACATCCGGGAAACGGTGGTTCCGTTTCTCAACAATTGTTTCAAACACCACCACCAGCACCACCACAGACGGAGTCTCAACCTCATGGAGGAGCAACAACCGGTGGATCAATTAGGCCGGGATCGATGACTGACAAGGCAAGGACGGCAAACATGCCTATGCCAGAAGCAGCACTGAAATGTCCACGTTGTGAATCAACCAACACAAAATTCTGCTACTTCAACAACTACAGTCTCTCTCAGCCCAGACACTTCTGCAAGACTTGCAGAAGGTACTGGACAAGAGGGGGTGCTCTAAGGAATGTCCCAGTTGGCGGAGGCTTCCGAAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGTAACTCAACAAAGTCTCCGGCTAGCTCTGACCGCCAAACCGGTAGTGCTAGTTCAACAACCTCAATCACATCCAATAATAATCACTCGTCCGCCGATATATTAGGCCTTACACCTCAAATGTCATCATTAAGGTTCATGACACCATTACATCATAACTTCAATAACCCTAATGATTATGGAGGAGGAGATTTAGGGTTAAACTATGGATTTAGTTACATGGGAGGAGGAGGAGGAGTAGGAGATTTAGGAAGTGCTTTAGTTGGTGGAAATGGTAATCCAATTTTATCTTCAAGTTCTTTGGAACAATGGAGGATGCCTATGCCTATGCCAATGCCTCAACAACATCATCAATTTCCATTTTTGGCTAATTTGGAGGGTTCAAATGGTAATTTATACCCTTTTGAAGGAAATGTTCAAAATCATGAGATGATAACAAGTGGTGGATATGTGAGGCCAAAGGTGAGTTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAAATGGAAGAAAGTATTAATAGGGGCTTTTTGGGAATTAATACCATCAATAATAATAGTAATCAAGGAAGTGAACAATATTGGAATAGTGCTGTTGTTATTGGTGGTAACTCTTCTGCAGCTAATTGGAATGATCATGTTTCTGGTTTTAGTTCTTCTTCTAATACTACTAGCAATCAAATGTAG 1128 0.4167 MTFTSIQAAYLDAANWQQHEQQQNHLQHPGNGGSVSQQLFQTPPPAPPQTESQPHGGATTGGSIRPGSMTDKARTANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTTSITSNNNHSSADILGLTPQMSSLRFMTPLHHNFNNPNDYGGGDLGLNYGFSYMGGGGGVGDLGSALVGGNGNPILSSSSLEQWRMPMPMPMPQQHHQFPFLANLEGSNGNLYPFEGNVQNHEMITSGGYVRPKVSSTSGIMTQLASVKMEESINRGFLGINTINNNSNQGSEQYWNSAVVIGGNSSAANWNDHVSGFSSSSNTTSNQM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0901 375 MobiDBLite consensus disorder prediction 17 40 - -
Tpr4g0901 375 MobiDBLite consensus disorder prediction 17 67 - -
Tpr4g0901 375 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Tpr4g0901 375 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Tpr4g0901 375 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Tpr4g0901 375 MobiDBLite consensus disorder prediction 137 177 - -
Tpr4g0901 375 MobiDBLite consensus disorder prediction 130 177 - -
Tpr4g0901 375 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 12 370 - -
Tpr4g0901 375 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 370 IPR045174 GO:0003700|GO:0006355
Tpr4g0901 375 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0901 Tpr-Chr4 8574092 8576082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0901 1 251 C2C2-Dof Transcription Factor Family AT2G37590 46.008 4.68e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr4g0901 zf-Dof 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0901 - - aip:107628427 307.76