Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4808 ATGGAAGAAGGGTTAGGTCACAACTCAGTTCCTCCTCCTGGTTCCATCGACAAGTCTAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCCGTTTTTTCAATGAATCCTCAAGCTCCACCTTCAGGACAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGGACCTCATGACTCTTCAACCACTGGGGCGAAACGTAGAGCGATGCCGACTCCACTTCGAGCATTTAGGAGTCCTCTAGGAGAGGACGAGGATTACAATGACAATGATGATTTTAGTAACACAAGAAATGCAGCATCGCGTTCGAGCCGGGTCAAACCGAAGAAGACCAAGATATATAGTGATTTTCATGTTGATTTGAGTGGTTTAGTTGGTATAAACCCGGCACACAAAGACGACGGTAACCGTGAAGTGGTTAATATTGTACTCATGACATTTGATGCACTAAGAAGAAGGCTAACCCAACTTGTAGATGCCAAGGAATTGAGCACGGGTTTGGTCAAGCGTGCGGATTTAAAAGTTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACGTGACGAAGAGGGTCGGAGCAGTGCCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAATTGTGTGTTGTTGGTTTGCATGCTCAGTCCATGGGGGGAATTGATGCCTTGCATATCACGGGTGTCCGCGAGGAAGAAACTTTGGCTGTAAGCATTGTTTCTTCGGGAGAATATGATGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGAACACACAATGAAATAAGAGTCATCCGAGGCATCAAAGATGCTGTGAATCCGAACTCAAAAATCTACGTCTATGATGGTCTATATAAAATTCAAGATTCATGGGTTGAAAAAGCCAAAGGCGGTGGTAGCTTGCTTAAGTATAAGTTGATAAGAGTGCCTGGACAGCCTAGTGCCTTTGCTGTTTGGAACTCGGTTCAGAAGTGGAAATCCGGCGTCCCTGCAAGGACTGGACTTATTCTTGCAGACCTCTCCTCAGGAGCCGAGAGTATTCCTGTATCGCTTGTCAATGAGGTCGATAATGTGAAGTCACCTGCCTTTTTCACATATTTTCACTCTCTTCGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGTTGCAGCTGTAATGCTAAAAAAGCATGTACCCCTGGTGATTTGGATTGCTCTTGCATTAGGAGAAATGAAGGTGATTTTCCATATATTTCCAACAGCGTTCTGGTGAGTCGTAAGCCGTTGGTTCATGAATGTGGCCCTACATGTCAATGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTAAAGCTCCAAATGGAAGTGTTCAAAACAAGCAATAAAGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGATAGGTTAAGTCAGCTTGTAAAAGAAGGAGATACTGACGAGTATGTTTTTGATACAACTCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGATACTGGAAGAAGTGAGCACAAATGAGTCTAGCGAGGATTATGCTCTGCCACATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCACCAAATGTTTTCTGGCAGCCTGTCATGTATGAAGAGAACAACCAATCCTTTCTCCATGTTGCTTTTTTTGCATTGAGACATATTCCCCCAATGCAAGAGTTAACATATGACTATGGATCTGAACGATCTGATAATGCTGAGGGTAGCAGTGCAAACAAAGGAAGAAAGAAATGCTTATGTGGATCACCAAAATGCCGCGGTTCCTTTACTTAA 1989 0.4233 MEEGLGHNSVPPPGSIDKSKILDIKPIRSLIPVFSMNPQAPPSGQYPSGFSPFFPFGGPHDSSTTGAKRRAMPTPLRAFRSPLGEDEDYNDNDDFSNTRNAASRSSRVKPKKTKIYSDFHVDLSGLVGINPAHKDDGNREVVNIVLMTFDALRRRLTQLVDAKELSTGLVKRADLKVGNICMTKGIRTNVTKRVGAVPGVEIGDIFFFRMELCVVGLHAQSMGGIDALHITGVREEETLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHRGNLALDRSSRTHNEIRVIRGIKDAVNPNSKIYVYDGLYKIQDSWVEKAKGGGSLLKYKLIRVPGQPSAFAVWNSVQKWKSGVPARTGLILADLSSGAESIPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHGCSCNAKKACTPGDLDCSCIRRNEGDFPYISNSVLVSRKPLVHECGPTCQCFPNCKNRVSQTGLKLQMEVFKTSNKGWGLRSWDPIRAGAFICEYAGEVIDKDRLSQLVKEGDTDEYVFDTTRIYESFKWNYEPKILEEVSTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVMYEENNQSFLHVAFFALRHIPPMQELTYDYGSERSDNAEGSSANKGRKKCLCGSPKCRGSFT* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4808 662 Pfam Pre-SET motif 376 476 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g4808 662 Gene3D SET domain 364 661 IPR046341 -
Tpr3g4808 662 Pfam SAD/SRA domain 194 347 IPR003105 -
Tpr3g4808 662 SUPERFAMILY PUA domain-like 177 365 IPR015947 -
Tpr3g4808 662 Pfam SET domain 495 631 IPR001214 GO:0005515
Tpr3g4808 662 Gene3D - 177 363 IPR036987 -
Tpr3g4808 662 SMART G9a_1 190 347 IPR003105 -
Tpr3g4808 662 ProSiteProfiles SET domain profile. 484 631 IPR001214 GO:0005515
Tpr3g4808 662 SUPERFAMILY SET domain 381 659 IPR046341 -
Tpr3g4808 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 661 - -
Tpr3g4808 662 ProSiteProfiles YDG domain profile. 195 343 IPR003105 -
Tpr3g4808 662 SMART set_7 484 637 IPR001214 GO:0005515
Tpr3g4808 662 ProSiteProfiles Pre-SET domain profile. 418 481 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g4808 662 SMART preset_2 372 468 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr3g4808 662 ProSiteProfiles Post-SET domain profile. 646 662 IPR003616 -
Tpr3g4808 662 MobiDBLite consensus disorder prediction 1 21 - -
Tpr3g4808 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 661 - -
Tpr3g4808 662 MobiDBLite consensus disorder prediction 58 109 - -
Tpr3g4808 662 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 662 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4808 Tpr-Chr3 52912665 52917499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4808 6 661 Su(var)3-9 homologs AT1G73100 52.135 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr3g4808 SAD_SRA 2.3e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4808 3 52912665 52917499 Tpr7g1542 7 17339556 17343285 PCT