Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4720 ATGTCTACCAACGATTCCTTCTCAAACCACAAACTCTGTGGTTTCCTCTCTACGGTTCTCACATCGCAACATTTCAACGACGCGCAATTCAACGATCGATGCGAGATTTTCAACGACGGTAACACTATTGCGTTTCGGACTCAAAACGGCGTCGTTTTAAGTCCTATTGTGGATTCGATCCAATGTGGGAGTCCGAATGGGAAGAAGAAAGTTGGAATGGTGAAAGGGAGCTTTAGCGTTGTTCATCAGCTTCATGCTTTGGTTGTTCGTAAATGTTTGGATATTGATGCTCGTGTTTTGTGTGTTGTGGAGGTTGAAGCTAGGGTTAGGGTTGTTGTGCTTGTTGATGTTTATCTTCCGGTTCAGGTTTGGAGTGGATGGCAGTTTCCGAAATCTGGTTCCGTCGCCGGCGCTGTTTTTCGCCATTTGAGCTGTGATTGGGAGGAGAGAAGTTCAATGCTTTCTGATCCAGACTACTGTAGAAAGACTCATGGAGAAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGATCCATTCCCCTATTAGAGGTGCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGTCAGTACCTTCACCTTGTGGAGAACAGCAGAAGATTATTATTTCCAAGATAATACCTATGGACCACACCTGCAGATCCGGGATTTGGGAGATCTCTGATGATATTTTAACTAAAATTCTATCTTCCCTGGGCCCGATGGACCTTCTAAGGGTTTCTGTAACGTGTCATCATCTAAGATCCTTGGCCGCTTCAGTAATGCCCTGCACAAAGTTAAAACTATTTCCTCATCAGCAGACAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTAATCTTTTGCCACATCCTTTATATATAGCTCTTTCAACTTATGATGGCTTTAGTTTCCATGTTAATACTGTATCTGGTGATATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAACCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACGAAGACACAAGGTACATTGGCTGATCCACCAGATGGGCTACAAGTAGTTTGGTGTCAACATAACGCTACCAAATGTGGCTATTATGAGATCAGTGAGAGGAATGTGTGCCAAGATACAGGTAGAAATAATGAGAACCATGTGTACTCCTCTGGAAGAGCCAAATTGTTAACTCCTGGTCAGGAAATCACTACACCTCATGATTCAGGTTCTGTAGGAGAATACAAATCACCTGCAGATGCTTGTTTTGAGGAATATACGCCTGCTAGTCGGTGCACCAGAAGCTTGGGTTGTGTAAAGAAAACTCTATGTTTCACAAATGACGAGGAAGCTATGATTTCCAATGATACAAGAGTTGGTAAAAGACCAATTATAACAAAACATGCATCAGATGTTGCATCCCATGTGTCTCAAAACAAGCTTGTTGATACTTCATACGGTTGTGGACAGAGTTATAAGTGGCACATGAAGCGTAAACGTAAAGTTGATTGTTTGGAATACAGTGATACATGGATTCAGTGTGACGCTTGTCACAAATGGCGAAAGCTTTCAGATAATAGTATGGCTAATTCCAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGAGTTCCAGAACAGTATATTCAGAAAAGCTGTAAGATAACTTACTTACCAGGATTTCACTTGAAAGGAACTCCTGGAGGTGAAAAACAAAACGTTGCATTTTTCACTAGTGTGCTTAAGGAGCACCACTCATTGATAAAGGCTCAGACAAAGAAGGCTCTGACTTGGTTGGCCAAAATTTCGATGGACAAGCTTGCAGTAATGGAAACGAATGGCATACGTGGTCCTATTTTAAACAATTGCACTTCGTCTAATGGGAGTTTGAATCCATATCACAAAATATTTCAAGCATTTGGCCTCGTAAAGAGAGTAGAGAAAGGTGTATGCAGGTGGTTTTACCCAAAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTTTCTCTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTGGTTGTTCCAGCAAACCTGGTCGATCATTGGAAAACACAAATAGAAAAGCATGTTAAGCCTGGTCAATTGCTGGTTTATGTTTGGAAGGATCATCGGAAACCATCTGCACACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGAGCCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTTGCATCTAATCGATGGATACTAACTGGAACCCCAACACCTAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCACGAAGAAGCATATGGACTGAATCAAAAGTCATGGGATGCTGGCGTGCTTAGGCCATTTGAGGCAGAGATGGAAGAAGGCCGGTCTCGTCTGTTGTGTTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGTAGATTTGCAAAGTATTCCACAATGCATCAAGAAAGTTGTTTTACTAGATTTTAGCGAGCAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTAAATCCAAAACAGTGGAAATTTCGGAGTGAAACTATAAAAAATGTCCGGCTTTCATGTTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTACAAAATGGTCTAGATTCTACTTCAGGGGAGTACACCTCCATAAAATATAGTCTCGTATATGGTAGCCGCTGTGTCAGGTGCAAAGAATGGTGCCGACTTCCTTTCATTACACCATGTCGACATCTCTTGTGCCATGAGTGTGTTTCGATAGACAAGACAAAGTGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAATCCTGATACAATGGCCCGGCCAGAAAACCCTAACCCAAAGTGGTCTGTCCCCAAAGATCTTATCGAGTTACAACCTTCATATAAGCAGGATAAGTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCATATCTTGTCCAGAGGTTGAAAGCTTTGCAAGGAACCAATGAAGATATGAGTTCATACACTGACAATAGCAATAATGAGATGCATATTGAGAATAGTTTTCCTTTGCACACTGGACATGCCGAATCATCATTCCAGGAATGTTCTACAAGTAGTATTAGCACCAATGTGGTCCCTGAAAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGTTAATGGTATCAAATATACTGGATTGTATAACCCAATGCATTCTAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCACCGCATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTGGCGATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAACGTAGAAGATTTCGTAATAAAGATGTCGTCAAATCTGAAGATGGTGGGGGACGAGGACATCGATCATTGCATGATTTTGCTGAAAGCAATTATTTACTGGAACTTAGATTTGTATAA 3933 0.4132 MSTNDSFSNHKLCGFLSTVLTSQHFNDAQFNDRCEIFNDGNTIAFRTQNGVVLSPIVDSIQCGSPNGKKKVGMVKGSFSVVHQLHALVVRKCLDIDARVLCVVEVEARVRVVVLVDVYLPVQVWSGWQFPKSGSVAGAVFRHLSCDWEERSSMLSDPDYCRKTHGENESIWNLSDCHVLGCKIHSPIRGASRERLFELHEIFKSVPSPCGEQQKIIISKIIPMDHTCRSGIWEISDDILTKILSSLGPMDLLRVSVTCHHLRSLAASVMPCTKLKLFPHQQTAVEWMLHRERNANLLPHPLYIALSTYDGFSFHVNTVSGDIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGLQVVWCQHNATKCGYYEISERNVCQDTGRNNENHVYSSGRAKLLTPGQEITTPHDSGSVGEYKSPADACFEEYTPASRCTRSLGCVKKTLCFTNDEEAMISNDTRVGKRPIITKHASDVASHVSQNKLVDTSYGCGQSYKWHMKRKRKVDCLEYSDTWIQCDACHKWRKLSDNSMANSSAAWFCSMNTDPLYQSCRVPEQYIQKSCKITYLPGFHLKGTPGGEKQNVAFFTSVLKEHHSLIKAQTKKALTWLAKISMDKLAVMETNGIRGPILNNCTSSNGSLNPYHKIFQAFGLVKRVEKGVCRWFYPKNLNNLTFDVAALGMAFSEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVKPGQLLVYVWKDHRKPSAHSLAWDYDVVITTFSRLSAEWSPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLCLLQKCMISARKVDLQSIPQCIKKVVLLDFSEQHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQNGLDSTSGEYTSIKYSLVYGSRCVRCKEWCRLPFITPCRHLLCHECVSIDKTKCTYPGCDNLYEMQNPDTMARPENPNPKWSVPKDLIELQPSYKQDKWDPDWQSTSSSKVAYLVQRLKALQGTNEDMSSYTDNSNNEMHIENSFPLHTGHAESSFQECSTSSISTNVVPEKVLIFSQFLEHIHVIEQQLAVNGIKYTGLYNPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKRRRFRNKDVVKSEDGGGRGHRSLHDFAESNYLLELRFV* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4720 1310 Pfam Helicase conserved C-terminal domain 1142 1243 IPR001650 -
Tpr3g4720 1310 Pfam SNF2-related domain 279 935 IPR000330 GO:0005524|GO:0140658
Tpr3g4720 1310 SMART helicmild6 1161 1243 IPR001650 -
Tpr3g4720 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1269 IPR027417 -
Tpr3g4720 1310 Pfam CW-type Zinc Finger 524 567 IPR011124 GO:0008270
Tpr3g4720 1310 SUPERFAMILY F-box domain 226 267 IPR036047 GO:0005515
Tpr3g4720 1310 Gene3D - 691 881 IPR038718 -
Tpr3g4720 1310 Gene3D - 519 573 - -
Tpr3g4720 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1137 1289 IPR001650 -
Tpr3g4720 1310 PANTHER OS01G0952200 PROTEIN 32 1301 - -
Tpr3g4720 1310 SMART ultradead3 272 848 IPR014001 -
Tpr3g4720 1310 Pfam F-box domain 234 268 IPR001810 GO:0005515
Tpr3g4720 1310 Gene3D - 1042 1301 IPR027417 -
Tpr3g4720 1310 CDD DEXDc_SHPRH-like 701 878 - -
Tpr3g4720 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 708 837 IPR014001 -
Tpr3g4720 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 357 IPR027417 -
Tpr3g4720 1310 CDD SF2_C_SNF 1148 1253 - -
Tpr3g4720 1310 ProSiteProfiles Zinc finger CW-type profile. 519 570 IPR011124 GO:0008270
Tpr3g4720 1310 ProSitePatterns Zinc finger RING-type signature. 1015 1024 IPR017907 -
Tpr3g4720 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 877 IPR027417 -
Tpr3g4720 1310 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 32 1301 - -
Tpr3g4720 1310 SMART fbox_2 234 274 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4720 Tpr-Chr3 52112988 52118935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4720 707 1273 RAD5 or RAD16-like Gene Family AT5G22750 26.194 7.81e-44 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr3g4720 SNF2_N 4.6e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4720 - - gmx:100803102 2033.84