Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4716 ATGGAGATGTCTATACATCAAGACAATTCTGATATCAACGGTATGGCAGTTGTAGGGTCAGGATCTTGCCTCTACGATCTCTTTTGCACTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGTTAACAGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCTGGAAACAAGTTCTGCGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTGCGAGTCTCGGAGTATTTATTTGCATTAAGTGCTCTGGTATACACAGAAGCTTAGGAGTTCATATATCTAAGGTTCTGTCACTGAGTCTAGATGATTGGACAGACGAACAAGTTGATTTGTTGGTCCACTTGGGTGGAAATACAGTTATCAATAAGAAGTATGAAGCTTGTTTGCCAAGTAATATTAAAAAACCTAAACCGAATTCTTCCATTGAGGAGCGCTCCGAGTATATTAGGAGAAAATATGAGTTTCAACAATTTTTGGATACTGAGGAGAATTTGTCTTGTCCCTTTCCATCCCACACAAGACATTCTTCAGGTGGTCACGTAAGAACTTCTTCACGTGACCACGCATCATCTGGTCATACAAGAACTTCTTCATCCGGTCAGACCAGTTCCTCCTCCAACGTAGACAAAAAACGCTATGATAAACAAACAACTAAAAATCGTCTCGGGCTAACATTTCGAAACAGTTGGGGAAGAAAAGAGTCTGAGTGTAAGACAAAAAAGAGTGGCTCATTGGCAGGTATGATTGAATTTGTCGGGTTGATTAAGGTTAATGTGGTAAAAGGCACCAACCTAGCCATCAGAGATTTAATGACTAGTGACCCTTATGTCATCCTTTCTCTTGGTCACCAATCGGTAAAGACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAATGTCTAATGCTATCGATTCCTGAGAGCATGCCTCCTCTTAAAGTGATTGTATATGACAAAGATTCATTCAAAAATGATGATTTTATGGGAGAGGCTGAAATAGATATTCAACCACTTGTTTCAGCAGCAAAAGCATATGAGAAATCTTCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGCTTGAAATTGAGCTTGAATGTGTACCTCTTACTCAATAG 1248 0.3982 MEMSIHQDNSDINGMAVVGSGSCLYDLFCTETPSLNSQSQRERWMLTGPQERLDNLMRQAGNKFCADCGSSEPKWVSASLGVFICIKCSGIHRSLGVHISKVLSLSLDDWTDEQVDLLVHLGGNTVINKKYEACLPSNIKKPKPNSSIEERSEYIRRKYEFQQFLDTEENLSCPFPSHTRHSSGGHVRTSSRDHASSGHTRTSSSGQTSSSSNVDKKRYDKQTTKNRLGLTFRNSWGRKESECKTKKSGSLAGMIEFVGLIKVNVVKGTNLAIRDLMTSDPYVILSLGHQSVKTRVIKNNLNPVWNECLMLSIPESMPPLKVIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQHVERGVLEIELECVPLTQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4716 415 CDD C2_ArfGAP 258 402 - -
Tpr3g4716 415 PRINTS HIV Rev interacting protein signature 62 81 IPR001164 GO:0005096
Tpr3g4716 415 PRINTS HIV Rev interacting protein signature 81 98 IPR001164 GO:0005096
Tpr3g4716 415 PRINTS HIV Rev interacting protein signature 102 123 IPR001164 GO:0005096
Tpr3g4716 415 Gene3D Arf GTPase activating protein 33 172 IPR038508 -
Tpr3g4716 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 350 IPR035892 -
Tpr3g4716 415 Gene3D C2 domain 258 412 IPR035892 -
Tpr3g4716 415 MobiDBLite consensus disorder prediction 196 213 - -
Tpr3g4716 415 CDD ArfGap 53 159 - -
Tpr3g4716 415 Pfam Putative GTPase activating protein for Arf 51 166 IPR001164 GO:0005096
Tpr3g4716 415 MobiDBLite consensus disorder prediction 177 224 - -
Tpr3g4716 415 SMART arf_gap_3 51 172 IPR001164 GO:0005096
Tpr3g4716 415 ProSiteProfiles C2 domain profile. 247 357 IPR000008 -
Tpr3g4716 415 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 415 IPR044518 GO:0005096|GO:0005543
Tpr3g4716 415 ProSiteProfiles ARF GTPase-activating proteins domain profile. 50 172 IPR001164 GO:0005096
Tpr3g4716 415 SUPERFAMILY ArfGap/RecO-like zinc finger 50 165 IPR037278 -
Tpr3g4716 415 Pfam C2 domain 260 350 IPR000008 -
Tpr3g4716 415 SMART C2_3c 260 355 IPR000008 -
Tpr3g4716 415 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 3 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4716 Tpr-Chr3 52083357 52088007 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4716 3 52083357 52088007 Tpr7g1659 7 18881311 18886733 PCT