Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4542 ATGATGGACTCAGAAGGAGAAGCTGGGGACAAGCCGATGAAGGCGTTGGGTAGCCAAATCTGCCAGATTTGTGGTGATAATATCGGTAGCGCTGTTAATGGTGATCCATTTATTGCTTGCGGTGTTTGTGCCTTCCCTGTCTGTAGGCCGTGTTATGAGTATGAAAGGAAAGATGGGAATCAGTCGTGCCCCCAGTGCAAAACTCGGTACAATAAGCATAAAGGTAGTCCTGCAATTCTTGGAGATCGGGAAGAGGATGGTGGTGCTGATAATGATACCAATGACTTCAAGTACAATTCAGAAACTCAGAGCCAAAAGCAAAAGATTGCAGAGCGCATGTTGAGCTGGCAAATGGCATATGGGCGAGGTGAGGAGGTTGATGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCGGCTAACCGGTGCACAAGAGGTATCTGGAGAATTATCTGCAGCCTCACCTGAGAGGTTGTCAATGGCATCTCCTGTAAATACTCGTGGGAAACGAGTTCACAATAATCCATCATATTCATCTGATCTTAATCAATCACCAAATATCAGGGTTGTTGAACCGGGATTGGGCAATGTAGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAACACGATAATAAGAATACTGCTCCAATGAGCACGGGCCAGGCTACTTCTGAAAGAGGAATAGGAGATATTGATGCCAGTACTGATGTGCTATTCGATGATTCCTTGTTGAATGATGAAGCTCGGCAACCTCTCTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCATACCGTATGGTTATTGTTCTACGGCTTGTTATCCTCTGCATTTTCTTGCACTACCGAATCACAAATCCTGTACGCAATGCTTATGCATTGTGGTTAATATCAGTGATTTGTGAAATTTGGTTTGCATTTTCTTGGATATTGGATCAATTTCCCAAATGGCTTCCTGTGAACCGTGAAACATATCTTGACAGGCTTTCACTAAGATATGATCGGGAAGGGGAACCGTCACAGCTAGCAGCAGTTGACATTTTCGTCAGTACTGTTGATCCGTTAAAGGAGCCCCCACTTGTGACAGCCAATACTGTACTATCAATTCTATCTGTTGACTACCCAGTGGATAAGGTTTCCTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAATCTCTTGCCGAGACGTCAGAGTTTGCAAGGAAATGGGTTCCTTTCGCTAAGAAATATGCCATTGAACCACGAGCACCTGAGTGGTACTTTTCAAAGAAAATTGACTACTTGAAAGATAAGGTCCAACCATCATTTGTCAAAGATCGTAGAGCAATGAAGAGAGAATATGAAGAATTCAAAATTCGTATCAATGGACTTGTTGCAAAAGCAGTAAAAGTTCCTGAAGAAGGATGGGTGATGCAAGATGGTACACCTTGGCCTGGAAACAACACCAGGGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGATACCGATGGTAACGAACTTCCGCGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTTCAACATCACAAGAAGGCCGGTGCCATGAATGCACTTGTTCGTGTTTCAGCTGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCATTACATAAACAACAGCAAAGCCTTGAGAGAAGCTATGTGTTTTATGATGGATCCCAACCTTGGAAAAAATGTTTGCTATGTTCAGTTTCCACAGAGATTTGATGGTATTGATAGGAATGATCGATATGCCAATCGTAATACGGTTTTCTTCGATATAAATTTGCGAGGATTGGATGGCATTCAAGGCCCTGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACTGCTTTATATGGTTATGAGCCTCCTATTAAACCCAAGCATAAAAAGGCTGGAATTATTTCGTCACTTTGCTGTGGAGATCGAAAAAATAGCTCAAAATCTAGCAAGAAAGGCTCAAAAAACAAGAAATCTAGCAAGCATGCTGATCCAACTGTCCCCATCTTTAGTCTAGAGGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGATGATGAGAAATCACTACTCATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCCTCCACACTTATGGAAAATGGAGGTGTTCCTCAGTCTGCAACTCCAGAAACTCTCCTCAAGGAGGCAATTCATGTTATCAGTTGTGGTTACGAAGATAAATCAGAATGGGGACAGGAGATTGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACTGGATTTAAGATGCATGCCCGCGGATGGAGGTCTATATACTGCATGCCTAAACTTGCAGCATTTAAAGGTTCAGCTCCTATCAATCTTTCCGATCGTTTGAACCAAGTGCTTCGGTGGGCTTTAGGTTCAGTGGAAATTCTAGTTAGTCGACATTGCCCCATATGGTATGGTTATAGTGGAAGGCTAAAGTGGCTCGAAAGGTTTGCCTATATTAACACCACAATCTATCCAATCACTTCCATTCCCCTTCTCATGTACTGTACCTTACCTGCTGTCTGTCTCTTGACTAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATGGTTCATATCTCTCTTTCTTTCTATCTTTGCAACTGGTATCCTGGAGATGAGGTGGAGTGGTGTTGGAATTGATGAATGGTGGAGAAATGAACAATTTTGGGTTATTGGTGGTGTTTCAGCTCATCTTTTTGCTGTGTTCCAAGGTTTACTCAAAGTACTTGCTGGAATTGACACAAACTTCACTGTTACCTCGAAGGCATCAGATGAAGACGGAGACTCTGCAGAACTATACATGTTTAAATGGACAACACTTCTCATTCCACCCACAACTCTTCTCATTATAAACTTAGTTGGAGTTGTTGCAGGAATCTCGTATGCAGTTAACAGTGGCTACCAATCATGGGGACCACTCTTCGGTAAACTTTTCTTCGCATTTTGGGTGATCATCCATCTTTACCCTTTCCTCAAAGGTCTCATGGGACGTCAGAACCGAACTCCAACCATTGTGGTTGTTTGGTCTATTCTTCTTGCTTCCATTTTTTCACTTTTGTGGGTACGAATAGACCCTTTTACGACAAGAGTCACCGGTCCTGATTCTGAGGTGTGTGGAATCAACTGCTAG 3237 0.4235 MMDSEGEAGDKPMKALGSQICQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCPQCKTRYNKHKGSPAILGDREEDGGADNDTNDFKYNSETQSQKQKIAERMLSWQMAYGRGEEVDAPNYDKEVSHNHIPRLTGAQEVSGELSAASPERLSMASPVNTRGKRVHNNPSYSSDLNQSPNIRVVEPGLGNVAWKERVDGWKMKHDNKNTAPMSTGQATSERGIGDIDASTDVLFDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLSLRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLAETSEFARKWVPFAKKYAIEPRAPEWYFSKKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAVKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKAGIISSLCCGDRKNSSKSSKKGSKNKKSSKHADPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGQEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILVSRHCPIWYGYSGRLKWLERFAYINTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDSEVCGINC* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4542 1078 MobiDBLite consensus disorder prediction 161 175 - -
Tpr3g4542 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Tpr3g4542 1078 MobiDBLite consensus disorder prediction 150 175 - -
Tpr3g4542 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 641 IPR029044 -
Tpr3g4542 1078 MobiDBLite consensus disorder prediction 77 92 - -
Tpr3g4542 1078 Pfam Cellulose synthase 350 1071 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr3g4542 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1078 - -
Tpr3g4542 1078 MobiDBLite consensus disorder prediction 77 104 - -
Tpr3g4542 1078 ProSiteProfiles Zinc finger RING-type profile. 21 67 IPR001841 -
Tpr3g4542 1078 CDD mRING-HC-C4C4_CesA_plant 19 69 - -
Tpr3g4542 1078 Pfam Zinc-binding RING-finger 11 86 IPR027934 -
Tpr3g4542 1078 MobiDBLite consensus disorder prediction 663 682 - -
Tpr3g4542 1078 SUPERFAMILY RING/U-box 6 89 - -
Tpr3g4542 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 891 IPR029044 -
Tpr3g4542 1078 PANTHER CELLULOSE SYNTHASE 3 1078 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4542 Tpr-Chr3 50577398 50584568 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1697 7 19415393 19422694 Tpr3g4542 3 50577398 50584568 PCT