Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4535 ATGTGCGGTGGTCCTGACAAATCAAAATCTCTTTCAACTTCGTCATCTCCATCATCGTCATCATCATCTGCTGTAGAAGTTTCAAACAACGTCAAAGACATGAAAAATCTAACTGTTCGTACTGATGATTCTTTTTCCAGCTTACTTGAATTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTAGCTTTAGATAGTGATGCTTCTCTTATTAACGAAGTTGGCCTCTGGTATGTCCGTCAAAATGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCGCTAATGGTGGCTGCTTCCTATGGGAGTATTGATATTCTAAAGCTTATACTCTCATGTCCAGAGGCTGATGTTAATTTCTCCTGTGGGACAGATAAAGGCACTGCTCTTCACTGTGCTGCTTCAGGGGGTTCTGTTAATGCGGTTGATGCTGTGAAACTGCTTTTATCAGCTGGCGCTGATATCAATTGTGTGGATGCTAATGGAAACCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGGTGGTGTGAAAACAATTCTTGAAGAACTTCTCTCAGACAGTGCTTCTGATGGGTCTGTTGATGATTGTTCTCTTCCAGCATCTGTTAATTCATCAAGTCCTCGTTCAGCTGCCCCTTTTTCATCAAATGAAAACGGGTCTCCATCCTCTCCTGGGGCTACTCCCAAGTTTACCGACACAGCTGCCAATTTTACATCAGAAAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCTACAGATGAATTCCGCATGTTTTCGTTCAAGGTTCGTCCCTGTTCTCGGGCATACTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAATTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCACCCAGCTCAGTATAGGACAAGGCTCTGCAAAGATGGTACTAGTTGTAACCGAAGGGTGTGCTTTTTTGCTCACATAACTGAAGAGCTTCGTCCGTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCTCGATCAGCTGCTTCTGCTGCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTAGTTCACCATCATCAATCTCGTCCATGTCTCCATCTCCCTTTGCACAGCCATTATCTCCATCTGCTAATGGCATGTCTCACTCAAATAATGCTTGGCCACAGCCAAATGTGCCTGCTCTTCATTTACCAGGAAGCAATGTTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCGTGATATGCCACTTGACGACTTCAACAATATGTTGCAAGACTTTGATGGTCAACAGCACATACTAAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATTTCAGTGGGTCGATCTGGTCGGTCTAAAGCACTAACTCCATCAAATCTCGAAGATCTATTTTGTGCTGAAATTTCATCTTCTCCTCGGTATTCCGACCCAGCAGCAGCTTCTGTATTTTCTCCAACACACAAATCTGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGTTCTTTATCACCTATTAATACAAATGTCATGTCTCCTAAGAATGTCGAGCATCCTCTATTCCACCAGGCTTCATATGGTGTCTCTTCTCCCGGAAGGATGTCACCAAGAAGTATGGAACCCCTCTCTCCAATGAGTTCTCGATTGTCAGCATTTGCTCAGCGTGAGATGCAGCAGCAACAGATGCGGAGCCTTAGTTCAAGAGAACTTGGTGCTAACAATCCTGTCTCGGCTGTTGGGTCCCCTGGTAACTCCTGGTCCAAGTGGGGATCCCCTACTGGAAAAGCAGATTGGTCGGTGAATGGACATGAGTTTGGACGTTCACCAAGATCCACCTCTTTTGAGCATGGAAACAATGGGCAGGAGCCTGATCTATCTTGGGTTCATTCCCTTGTCAAGGAATCCCCGCCTGAGATAAAAGAGAAGCTGGCAGCTTCTGGTCCAATTGCATCTACTGATCCGAATTCCAATCCTCAAGTGGAGTCTATTGATCATTCAGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 2193 0.4455 MCGGPDKSKSLSTSSSPSSSSSSAVEVSNNVKDMKNLTVRTDDSFSSLLEFASNNDFEEFKVALDSDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAASYGSIDILKLILSCPEADVNFSCGTDKGTALHCAASGGSVNAVDAVKLLLSAGADINCVDANGNRPVDVIVVPPKLGGVKTILEELLSDSASDGSVDDCSLPASVNSSSPRSAAPFSSNENGSPSSPGATPKFTDTAANFTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHITEELRPLYVSTGSAVPSPRSAASAANVMDMAAAMSLFPSSPSSISSMSPSPFAQPLSPSANGMSHSNNAWPQPNVPALHLPGSNVQTSRLRSSLSARDMPLDDFNNMLQDFDGQQHILNDLSCFSQPRPGAISVGRSGRSKALTPSNLEDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMSSRLSAFAQREMQQQQMRSLSSRELGANNPVSAVGSPGNSWSKWGSPTGKADWSVNGHEFGRSPRSTSFEHGNNGQEPDLSWVHSLVKESPPEIKEKLAASGPIASTDPNSNPQVESIDHSVLGAWLEQMQLDQLVV* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4535 730 Pfam Ankyrin repeats (3 copies) 82 159 IPR002110 GO:0005515
Tpr3g4535 730 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Tpr3g4535 730 Gene3D - 6 208 IPR036770 -
Tpr3g4535 730 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Tpr3g4535 730 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Tpr3g4535 730 MobiDBLite consensus disorder prediction 7 27 - -
Tpr3g4535 730 PRINTS Ankyrin repeat signature 91 106 IPR002110 GO:0005515
Tpr3g4535 730 PRINTS Ankyrin repeat signature 144 158 IPR002110 GO:0005515
Tpr3g4535 730 MobiDBLite consensus disorder prediction 192 234 - -
Tpr3g4535 730 PANTHER UNKEMPT FAMILY MEMBER 28 728 IPR045234 -
Tpr3g4535 730 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 28 728 - -
Tpr3g4535 730 SMART ANK_2a 90 120 IPR002110 GO:0005515
Tpr3g4535 730 SMART ANK_2a 125 157 IPR002110 GO:0005515
Tpr3g4535 730 ProSiteProfiles Ankyrin repeat profile. 125 160 IPR002110 GO:0005515
Tpr3g4535 730 SUPERFAMILY Ankyrin repeat 37 170 IPR036770 -
Tpr3g4535 730 Gene3D - 304 367 - -
Tpr3g4535 730 MobiDBLite consensus disorder prediction 615 639 - -
Tpr3g4535 730 MobiDBLite consensus disorder prediction 1 27 - -
Tpr3g4535 730 ProSiteProfiles Ankyrin repeat region circular profile. 125 159 - -
Tpr3g4535 730 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 329 IPR000571 GO:0046872
Tpr3g4535 730 MobiDBLite consensus disorder prediction 190 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4535 Tpr-Chr3 50485454 50490484 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g4535 Ank_2 1.2e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4535 3 50485454 50490484 Tpr3g4535 3 50485454 50490484 ECH
Tpr7g1702 7 19462431 19465827 Tpr3g4535 3 50485454 50490484 PCT