Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4409 ATGATTGAAAATAAAGATCCTGCAATTAAGCTATTTGGCAAGAAGATTCTCTTTCCTGGGGAAGTTGAAGCTCTTGCTATTGCTGATGATGAAAATGTTTCGCCGCCGGCGGCTATGGATGTAGAAGAAGTGGAAGAGGGAGACTTTGGTGAATCTGATAATGAGGAAGAAGAAGAAATTGAGAAGGATCATGGAGCAGAAAATGATACTGAGAAAAAGAAAGAGGCTGATCCTCCTCCAAATGCTGAAGACACCAAGAACAACAACAATTCAGCACCAACAACATTAGCTGAGCCAATTCAAAACCCAAAAACACCTTCAATAGATGAAGAAACTTCAAAATCCGAAAACGAACAACAAAGCACAAACAACAATGAAGACAAAACACTAAAAAAACCCGACAAATTACTCCCGTGTCCACGCTGCAATAGCATGGACACGAAATTCTGTTACTACAACAACTACAACATTAATCAACCGCGCTATTTCTGCAAGGCGTGTCAAAGATACTGGACCGCGGGTGGAACCATGAGGAATGTTCCGGTTGGTGCAGGGAGAAGAAAAAACAAGAACAATTCATCTTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCGAGAATCATTTCCCCGAACGGAACTCATCATCTTCAAAATTTTAAAACCAATGGTAGAGTCCTAAGCTTTGGATTGGATCATCCACAAATCTGTGATTCAATGTCAAATGTTTTCAATCCATCAGAGAAAAAGGGTCTTAACAACACTCAAACTAATGGCGACCAATGCTCGAGCGCGTCTTCTATTAAAGTTTCGAAATCTATAGAGGAAAGTGGTAGAAACATGTCACAAGAATCATTACCACAACAAAATAATGGTTTCATTCCTCAAGTTCCATGTATGACTAGTGTTCCTTGGCCTTATCCTTGGAGTACCGGCGCAATTCCCTCCCCGCAAACTTTGTATCCTCCGGGATTTCCCATGTCATTTTACCCTAATCCTTTTTGGAACTGTGGTGTTCCGGGCAATTGGAATGTTCCTTTGTTTACATCTCATACTTCCGCGACAACTCCTATGTCTCCGAACTCTAGTCCGAAATCTCCAACACTCGGGAAGCATTCGAGGGATGAAGACAAAAACATAGATAAACAAGACAATTTGCTAAATGATGAATCACCAAAACAAAGAAATGGGTGTGTTTTGGTTCCAAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCAATATGGGAAACACTTGGAATTAAGAATGAAGGTGTGAGTAGGGGAGGTATGATTAAAGCATTTCAATCAAAGAATGATGGTAAAAAACATCATGTTCAAACTTCTCCAATGTTGTTGGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAAAACTCTTAA 1428 0.402 MIENKDPAIKLFGKKILFPGEVEALAIADDENVSPPAAMDVEEVEEGDFGESDNEEEEEIEKDHGAENDTEKKKEADPPPNAEDTKNNNNSAPTTLAEPIQNPKTPSIDEETSKSENEQQSTNNNEDKTLKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALDAARIISPNGTHHLQNFKTNGRVLSFGLDHPQICDSMSNVFNPSEKKGLNNTQTNGDQCSSASSIKVSKSIEESGRNMSQESLPQQNNGFIPQVPCMTSVPWPYPWSTGAIPSPQTLYPPGFPMSFYPNPFWNCGVPGNWNVPLFTSHTSATTPMSPNSSPKSPTLGKHSRDEDKNIDKQDNLLNDESPKQRNGCVLVPKTLRIDDPNEAAKSSIWETLGIKNEGVSRGGMIKAFQSKNDGKKHHVQTSPMLLANPAALARSLNFHENS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4409 475 MobiDBLite consensus disorder prediction 356 381 - -
Tpr3g4409 475 Coils Coil 469 475 - -
Tpr3g4409 475 PANTHER CYCLIC DOF FACTOR 2 1 474 IPR045174 GO:0003700|GO:0006355
Tpr3g4409 475 MobiDBLite consensus disorder prediction 356 371 - -
Tpr3g4409 475 MobiDBLite consensus disorder prediction 41 64 - -
Tpr3g4409 475 MobiDBLite consensus disorder prediction 82 108 - -
Tpr3g4409 475 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Tpr3g4409 475 MobiDBLite consensus disorder prediction 255 293 - -
Tpr3g4409 475 PANTHER CYCLIC DOF FACTOR 1 1 474 - -
Tpr3g4409 475 MobiDBLite consensus disorder prediction 65 81 - -
Tpr3g4409 475 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Tpr3g4409 475 MobiDBLite consensus disorder prediction 28 132 - -
Tpr3g4409 475 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4409 Tpr-Chr3 49161883 49165283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4409 1 473 C2C2-Dof Transcription Factor Family AT3G47500 45.365 3.32e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr3g4409 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4409 - - gsj:114409713 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3155 6 34051349 34054496 Tpr3g4409 3 49161883 49165283 ECH
Tpr2g0338 2 4002273 4005428 Tpr3g4409 3 49161883 49165283 ECH
Tpr2g1994 2 23780047 23782248 Tpr3g4409 3 49161883 49165283 ECH
Tpr3g4409 3 49161883 49165283 Tpr3g4409 3 49161883 49165283 ECH