Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3446 ATGCAATCATCAAACGGTGCTAATTCTGATTCCAATTCCAAACCAACGGAACAGATTACTACTACTACTACTACTACGACGACTCAACACCGTCCTAACAAAACGCCGCCGCATTCACTTACTGTTCCGCCACACCAACAGTGGATTCCGATGCAATATCCAGCGCCGGCAATGGTAATGCCACATCATATGTTACCGCCTCAACATTATGCGCCGCCACCGCATCATTATTTGCCTTATCATTATCATCATCAACAACATGTGCCTCACGTGCATCATGGATCTAGTGCTGATAATAAGACCATCTGGGTCGGTGATTTGCATCATTGGATGGATGAGAATTATCTTCACCGTTGTTTTGCTTCTACCGGCGAGATTTTCTCGATTAAGGTTATTCGCAATAAGCAGACTGGTCAAACGGAGGGATATGGATTTGTGGAATTCCATTCACATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCCAACACAGAGCAATATTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTAATAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCAAAGGCTATGAATGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCTAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTTGGAGGACTGGACCCTAGTGCTACTGCTGAAGATCTCAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATCCCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGCCAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGTACAACAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGCAACCCAGCAAATAAGCAGTTTAGAACGGATTTTGGCAGTCCCTGGAATTCGCCGGCGTATTATGGAGGAGCTGTTTATGATGGGTATGGATATGCTTTGCATCATCCTCATGACCCGAGCATGTATGCTGCTGGTTATGGGGCTTACCCCATTTATGGAGGACACCAGCAACAAGTAAGCTAA 1293 0.4393 MQSSNGANSDSNSKPTEQITTTTTTTTTQHRPNKTPPHSLTVPPHQQWIPMQYPAPAMVMPHHMLPPQHYAPPPHHYLPYHYHHQQHVPHVHHGSSADNKTIWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQYFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFGSPWNSPAYYGGAVYDGYGYALHHPHDPSMYAAGYGAYPIYGGHQQQVS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3446 430 SUPERFAMILY RNA-binding domain, RBD 59 181 IPR035979 GO:0003676
Tpr3g3446 430 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 40 429 - -
Tpr3g3446 430 MobiDBLite consensus disorder prediction 272 295 - -
Tpr3g3446 430 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 40 429 - -
Tpr3g3446 430 CDD RRM3_NGR1_NAM8_like 298 369 - -
Tpr3g3446 430 MobiDBLite consensus disorder prediction 274 295 - -
Tpr3g3446 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Tpr3g3446 430 CDD RRM1_SECp43_like 101 181 - -
Tpr3g3446 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 371 IPR000504 GO:0003723
Tpr3g3446 430 SUPERFAMILY RNA-binding domain, RBD 193 372 IPR035979 GO:0003676
Tpr3g3446 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Tpr3g3446 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 364 IPR000504 GO:0003723
Tpr3g3446 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Tpr3g3446 430 CDD RRM2_SECp43_like 193 272 - -
Tpr3g3446 430 Gene3D - 99 179 IPR012677 -
Tpr3g3446 430 SMART rrm1_1 101 176 IPR000504 GO:0003723
Tpr3g3446 430 SMART rrm1_1 195 269 IPR000504 GO:0003723
Tpr3g3446 430 SMART rrm1_1 300 367 IPR000504 GO:0003723
Tpr3g3446 430 MobiDBLite consensus disorder prediction 1 44 - -
Tpr3g3446 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Tpr3g3446 430 Gene3D - 292 401 IPR012677 -
Tpr3g3446 430 Gene3D - 181 291 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3446 Tpr-Chr3 38003167 38007198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3446 74 378 Eukaryotic Initiation Factors Gene Family AT4G34110 27.476 8.88e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3446 3 38003167 38007198 Tpr3g3446 3 38003167 38007198 ECH
Tpr1g3708 1 41186933 41195301 Tpr3g3446 3 38003167 38007198 PCT