Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2775 ATGGGTTTATCTTCTCTTCACGTTTGCAATAGTATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGAGGAATCAGGAATGGATTCATCTTCACCAATATCTGGTGACATGCTAACATGTTCAAGACCATCATCCATGATAGATCAAAGGAGGCTAAGACCACCACATGACCTATCTCTAAAATGTCCGAGGTGCGACTCAACTCACACCAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGAAACATCCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCTAACAAAAAATCCAATGATAATAATCACCATTTAGTTACTAGTAATAATAATAATATTCAAAACCAACCACATCACGTTCCTTCTTACCATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAATCCTAGACCTATTGATTTCATGATGGAAAGTAAGTTAGAAGGTATAATTGGAAGTAGTTCTAGGAATTTTGATAATTTTTTTGGAAATGGTGATCATATGAGTATGAATATGGGAGGAGTTGGGATTGGAGGTGGTGATATGATGAATGGTACTCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGCATGTCATTTGATGGAGGAAACAATAACAGTGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCTTATGATGCTAATGATGATCAGGATCATAATGATGTGAAACCAAACCCTAAATTATTGTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGATATGGATCATGGAGTGGTAGTATGATGAATGGTTATTATGGATCTTCTACAACAAACCCTTTGATCAACGGCTGA 1017 0.3697 MGLSSLHVCNSMESSADHWLQGTIHEESGMDSSSPISGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDNNHHLVTSNNNNIQNQPHHVPSYHHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLENPRPIDFMMESKLEGIIGSSSRNFDNFFGNGDHMSMNMGGVGIGGGDMMNGTQNGLSQNFHHAFGGMSFDGGNNNSGAYLMDSCQRLMLPYDANDDQDHNDVKPNPKLLSLEWQQDQGCSDVGKESFGYGSWSGSMMNGYYGSSTTNPLING* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2775 338 ProSiteProfiles Zinc finger Dof-type profile. 63 117 IPR003851 GO:0003677|GO:0006355
Tpr3g2775 338 Pfam Dof domain, zinc finger 62 117 IPR003851 GO:0003677|GO:0006355
Tpr3g2775 338 ProSitePatterns Zinc finger Dof-type signature. 65 101 IPR003851 GO:0003677|GO:0006355
Tpr3g2775 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 325 IPR045174 GO:0003700|GO:0006355
Tpr3g2775 338 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 18 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2775 Tpr-Chr3 28481702 28483935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2775 1 336 C2C2-Dof Transcription Factor Family AT5G62940 40.299 1.67e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr3g2775 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2775 - - gmx:100806697 431.024