Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1946 ATGTTTGGTAACTGTGTTCATGAGAAAACGGTAATCACTTCCAACAAATTGACACAGAGTATTGAGATAGATGATCATCATAATAATAAGGTTTCAATTTCAATGGCTTCTTCAAGTGGTGGTGGTAATAGGGTTATGGAAAAACCAGGACAAGAACTTGTTCAACAACAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAATACAAAATTCTGTTACTACAATAACTATAGTTTATCACAACCAAGACACTTTTGCAAAGCTTGTAAAAGATATTGGACAAGAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTGTTAAGAGACCAAATCATTCTTCTTCAAACAATAACATTGATTCTCCTTCTTCTTCAAATCCTACTAGTGTTACTGCTAATTCTTCAAACCCTTCTTCTCAACAACAACATCATAGTTTTGATGTTGCTAATTCTACTTCAAACCATATTAATACTCTGCTTTATGGTAACAACTCTTGTCATGATGTTATGAATTTTCCTTTTGCAACAAGGTTTAATTCGACACGAGTTTCAAGTTCTGGTTCTGGTTATGATCATCTTCAACAAAATGGTCTTGGATTAGGCTTTTCATCTGGTTTAGCTAATCTTAATCACCATGATGATTATAGAAATGGGTTTAGTACTACTTCAAATAATAACAATTACAGTTCCATCTTTGGTTCTTCTATGGGTTCTACTACTCCAGTTATGAGTTCTCTACTTAGCTCTACACTACTGCAACAGAAATTCATGAGTACTGTTGGCGGTGGCGGCAACGACGGCAGCATGAAAGGTGATCTTTTTCATCATCATGATATGAAAATGGAAGGAAATAGTAGAAGTGATGAGGTTGAGTTGATGGCTTCAAAAGAAGGACTGACTAGGTTGGATCAGTGGAACAGCAATAACATGAATGGTACTAATGGTGTTGCTTTTCAAAACCAGATGGAGAATATGGGTTTATCTGATTCAGGTTATTGGAATAATAGTAACAACAACAACAACAACATAGCCACAACAGGTTTGGGTAGTGTTTGGAGTACTGATCAACCTAATAATATTGGTTCTAATTCAGTTACTTCTCTGATCTAG 1137 0.3571 MFGNCVHEKTVITSNKLTQSIEIDDHHNNKVSISMASSSGGGNRVMEKPGQELVQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNHSSSNNNIDSPSSSNPTSVTANSSNPSSQQQHHSFDVANSTSNHINTLLYGNNSCHDVMNFPFATRFNSTRVSSSGSGYDHLQQNGLGLGFSSGLANLNHHDDYRNGFSTTSNNNNYSSIFGSSMGSTTPVMSSLLSSTLLQQKFMSTVGGGGNDGSMKGDLFHHHDMKMEGNSRSDEVELMASKEGLTRLDQWNSNNMNGTNGVAFQNQMENMGLSDSGYWNNSNNNNNNIATTGLGSVWSTDQPNNIGSNSVTSLI* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1946 378 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Tpr3g1946 378 MobiDBLite consensus disorder prediction 120 156 - -
Tpr3g1946 378 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 351 IPR045174 GO:0003700|GO:0006355
Tpr3g1946 378 MobiDBLite consensus disorder prediction 106 156 - -
Tpr3g1946 378 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Tpr3g1946 378 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Tpr3g1946 378 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 41 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1946 Tpr-Chr3 17525065 17527252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1946 42 173 C2C2-Dof Transcription Factor Family AT5G65590 51.515 1.16e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr3g1946 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1946 - - cam:101512658 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1946 3 17525065 17527252 Tpr3g1946 3 17525065 17527252 ECH
Tpr3g1946 3 17525065 17527252 Tpr2g2356 2 28410788 28412831 PCT