Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1870 ATGGGTTTGAGTTCTAAACAGGTTATTTCTAGCAGTGGAGTTGATTGGAAACAAACCTTATTAGAATCACAAGATTTAGAACTTCCAAAACCTCATCATCTAATGAGAAAACAACAACAACAGCAACAACAACAAACTCAACAGCAATCAGAACATTTGAATTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTATAACAATTATAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGCGGAACGTTACGCAACGTTCCGGTTGGTGGTGGAAGAAAGAATAAGAGAAGCAAAAAATCAAACACACCAGTTACTTCTTCAACCACTACAGCTACTACTACTTGCACCACCTCAATTGTTGCTAATAATATGAATGGTGGTTTGAATTTGAATAGCAACCTGATGATTCAAAACCCTCTTGGAGTTAGTGATCAAAAAACCATTCCTTCATCTCTATATCAAGCTTTAATTCATCCACCATCTTTGCTTCTACAACAGAATATGATGAATACAAGAGACTTATCAGAAACCAAAGATTTTGGTATTGGTAATGGTCATCATGGTAATGGAGTTTTTACTAGTACTAGTTCAACTATGAATCTTCCTCATCAAAATCAAAGCATGATCTTTCCCTTTTCAACTTCAACTTCATTTGACAGAACTACTTGTTCATCTTCTAATGTTTATTACTATGGAGAAGAGTTTAAAACAATGGAGGAACCTGCAGCTAACACAAAGCCATGGGAGATACCTCCTGCAGCAGCAGCGGCGGCGGCGGCAACAACTGGTGGAATGGAAGCTACAAAGTATTGGAATTGGGAAGACATTGATTCATTGGTATCAACTGATCTAAAGAATCCTTATTGGGATGATTCTGATATCAAACCTTGA 921 0.3702 MGLSSKQVISSSGVDWKQTLLESQDLELPKPHHLMRKQQQQQQQQTQQQSEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRSKKSNTPVTSSTTTATTTCTTSIVANNMNGGLNLNSNLMIQNPLGVSDQKTIPSSLYQALIHPPSLLLQQNMMNTRDLSETKDFGIGNGHHGNGVFTSTSSTMNLPHQNQSMIFPFSTSTSFDRTTCSSSNVYYYGEEFKTMEEPAANTKPWEIPPAAAAAAAATTGGMEATKYWNWEDIDSLVSTDLKNPYWDDSDIKP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1870 306 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Tpr3g1870 306 MobiDBLite consensus disorder prediction 35 54 - -
Tpr3g1870 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 238 IPR045174 GO:0003700|GO:0006355
Tpr3g1870 306 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Tpr3g1870 306 MobiDBLite consensus disorder prediction 94 119 - -
Tpr3g1870 306 MobiDBLite consensus disorder prediction 33 54 - -
Tpr3g1870 306 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Tpr3g1870 306 PANTHER OS06G0284500 PROTEIN 39 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1870 Tpr-Chr3 16923539 16925537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1870 49 196 C2C2-Dof Transcription Factor Family AT5G66940 42.581 9.46e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr3g1870 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1870 - - mtr:MTR_4g089095 460.299