Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1479 ATGAGTAAAGGAAACAAAATGTTTCCAATTTGGTTAATCACCATTGCAGTAGTAGTAGCATCAACCCAAGCACAACCAGAAGCAAATTTCCAGTGCAAAACAGAAAACGCCACGTGTCGCAGTATAACAGAATACACAAACCCAAACACAACAACCTTAAAGGAAATCGCAACCCTCTTCGGCATAAAACACTACCTCGATTTCCTCGGAGCTAACAACCTCCCAACAAACACACAAAACAGTTACAAAGTTAGTCCCAACACAGTCATCAAGGTTCCATTTCCTTGTAAATGCAATAACGGAACAGGAAAATCGAACCATGTTCCAAAGTACAAAATTAAACCGGGTGATGGGTTGGATGCTATAGCTAGAACCCGGTTCGCTGGTTTGGTTAAGTATCAACAGATCCAAACCGCTAATAAGATTGTTGATGCTAATAATATAACTGCTGGTGATACCATTTGGATTCCTTTGCCTTGTAGTTGTGATAAGGTAGATGGAAATAGTGTGATGCATTATGCACACATTGTTGAATCTGGAAGTAGTATTGATTCTATTGCTCAAGAATATGGTACTACTCAACTGAGTTTACTCACAATTAATGGTATTAAAGATCCTAAAACCCTTGAAGCCGGTCAGCTTCTTGATGTTCCTCTTCCAGTTTGTAACTCTAGTGTGAAAAGTGATTCAATCGATTTTCCATTGCTTGTACCAAATGGGACTTATTTCTACACTGCAAATCAATGTGTCAAATGTAAATGCGATTCTATCAACAATTTCATGTTACAATGTGAGCCATCAAACCAAAAACCAATAAATAATTGGTCGGTTTGTCCATCTGCGAGATGTTCTGCAAGTGTGTTGATTGGGAACACTACATCGACAGATTCGTGTAATCGTACAGTTTGCGATTACAGTGGTTATACTTCTAGCAATATCTCTACTGTTCTTGTTACCCAAAACGCTTGTGCTGTGACACCGAGCAGCGGCGGCGGCGATTCAGATTCAGGGGCATCCAGGAGCATATTGAATGGCTGGGTTTGGAATAAGCTTCTTGTTCTCATTCACTCCCTCCTCTTTTTTGTTTATCTTTTGTAG 1098 0.398 MSKGNKMFPIWLITIAVVVASTQAQPEANFQCKTENATCRSITEYTNPNTTTLKEIATLFGIKHYLDFLGANNLPTNTQNSYKVSPNTVIKVPFPCKCNNGTGKSNHVPKYKIKPGDGLDAIARTRFAGLVKYQQIQTANKIVDANNITAGDTIWIPLPCSCDKVDGNSVMHYAHIVESGSSIDSIAQEYGTTQLSLLTINGIKDPKTLEAGQLLDVPLPVCNSSVKSDSIDFPLLVPNGTYFYTANQCVKCKCDSINNFMLQCEPSNQKPINNWSVCPSARCSASVLIGNTTSTDSCNRTVCDYSGYTSSNISTVLVTQNACAVTPSSGGGDSDSGASRSILNGWVWNKLLVLIHSLLFFVYLL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1479 365 SUPERFAMILY LysM domain 110 158 IPR036779 -
Tpr3g1479 365 CDD LysM 111 156 IPR018392 -
Tpr3g1479 365 Gene3D LysM domain 108 166 IPR036779 -
Tpr3g1479 365 Gene3D LysM domain 172 229 IPR036779 -
Tpr3g1479 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 324 - -
Tpr3g1479 365 CDD LysM 175 217 IPR018392 -
Tpr3g1479 365 Pfam LysM domain 111 157 IPR018392 -
Tpr3g1479 365 Pfam LysM domain 175 218 IPR018392 -
Tpr3g1479 365 SUPERFAMILY LysM domain 173 219 IPR036779 -
Tpr3g1479 365 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Tpr3g1479 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 324 - -
Tpr3g1479 365 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Tpr3g1479 365 SMART LysM_2 110 157 IPR018392 -
Tpr3g1479 365 SMART LysM_2 174 218 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1479 Tpr-Chr3 13216818 13219859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1479 24 356 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 42.985 6.51e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1479 - - cam:101506878 534.643