Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1420 ATGTTAGACAACAACAACACTGCTACTAATTCCACTTCTGATCCTGCTTTTGCATTATCAGAAAATGGGGGTGTTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTTTGTCACCAAAGACTTTGTTAGAATCTGATAGATATGTTTGTGAGATCTGTAACCAAGGTTTTCAAAGAGACCAGAATCTACAAATGCATAGAAGAAGACACAAAGTACCATGGAAATTATTGAAAAGAGAAACAACACAAGGATTAAAAAAGAGGGTTTTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCTTGTCATGCACTTGGTGATCTTGTTGGAATTAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGATAAATGTAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACTTGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCACTATCAGAGGGAAGCACCAACCAGATTTACAAGCAACAACAATGCAACCTGCATGCTCTTCAAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATATCAGCTCCATTACAAGGACTACCAGTACTTCCAAAACCACCCGATAAACCATCAACAACACCTATCTTATTAACCAATTCAAATATACACAACAAACCTTCCACTTCAACTTCACATCATCACCATAACTTAGAACTTCAACTCTTATCACCTTCTTCTATAAAACCTCAAGCAGAAAAACCAAAGGATATTCAAAACTATGAAACAACTCATTTGAAACTTTCAATAGGGAGTAACAATGAATCAGATAAACAAAGGAATTATAATTATACCTCTACATTGGAAGTAGCAAGGTTGAAGGAGTTTACTAATGAGGCTAAAGTTGGCAAGTCAGAAAAGGTTTATGCAGAAGAAGCTAGAAAAGAAGCTAAAAGACAAATTGAGATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGAATAAGGAAGCAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGTAACACTGTTATGGAAATAACATGTCAAGCTTGTAAGCAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCTATTGTTATGGGTTATGTGTCCTCAGCAACCACCGAAGGAGAAGCAGAATGA 1284 0.3637 MLDNNNTATNSTSDPAFALSENGGVNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPDLQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPSTTPILLTNSNIHNKPSTSTSHHHHNLELQLLSPSSIKPQAEKPKDIQNYETTHLKLSIGSNNESDKQRNYNYTSTLEVARLKEFTNEAKVGKSEKVYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYVSSATTEGEAE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1420 427 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g1420 427 PANTHER OS03G0310200 PROTEIN 1 427 IPR039288 GO:0009630
Tpr3g1420 427 MobiDBLite consensus disorder prediction 194 262 - -
Tpr3g1420 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Tpr3g1420 427 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Tpr3g1420 427 MobiDBLite consensus disorder prediction 1 45 - -
Tpr3g1420 427 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tpr3g1420 427 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 427 - -
Tpr3g1420 427 SMART c2h2final6 135 162 IPR013087 -
Tpr3g1420 427 SMART c2h2final6 99 129 IPR013087 -
Tpr3g1420 427 SMART c2h2final6 57 79 IPR013087 -
Tpr3g1420 427 Gene3D Classic Zinc Finger 35 100 - -
Tpr3g1420 427 Coils Coil 333 381 - -
Tpr3g1420 427 MobiDBLite consensus disorder prediction 239 262 - -
Tpr3g1420 427 MobiDBLite consensus disorder prediction 194 221 - -
Tpr3g1420 427 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Tpr3g1420 427 Gene3D Classic Zinc Finger 112 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1420 Tpr-Chr3 12602967 12606284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1420 1 427 C2H2 Transcription Factor Family AT2G01940 53.642 7.98e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g1420 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1420 3 12602967 12606284 Tpr3g1420 3 12602967 12606284 ECH