Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1254 ATGGGTCGTCGCAAAATTGAGATTGAGTCTGTAAGAGACCCCAACATGAGGCAAGTTACATTCTCAAAACGTCGATTAGGATTATTCAAAAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTTGCTATTGTCATGTTTTCTCCGGGGAATAAGCCTTACTCTTTTGGGCACCCAGGAGTTGACGTTGTTGCGGCCAAGTATCTTCAACAAAATCATGAACCAAGTGACTCTGAAGGAGACCCCTCGTATGATGCTTTCAATATGGAAGAGCTGAATCTGGAACTTGATGAGGTGTTGGCCCAGATCCGTGAAGGTGAAAAGCAGATGGAGACGTATGATGAGATCCTTAAGCAAAATGAAGTGACAACACTCTCTAGTCTTGAAGAATTGAAAGATTCGTATAAAGAGTTTCAAGACAAGGTAAAGTTGCGTCTTAGTGATCTTGAGATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCAGTGGTGGGGGTTAACACAAAATCTGCAAAAAGTGAATAA 528 0.411 MGRRKIEIESVRDPNMRQVTFSKRRLGLFKKANELSILCGAEVAIVMFSPGNKPYSFGHPGVDVVAAKYLQQNHEPSDSEGDPSYDAFNMEELNLELDEVLAQIREGEKQMETYDEILKQNEVTTLSSLEELKDSYKEFQDKVKLRLSDLEISECMMLLAKEPVVGVNTKSAKSE* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1254 175 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Tpr3g1254 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Tpr3g1254 175 PANTHER MADS BOX PROTEIN 2 170 - -
Tpr3g1254 175 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Tpr3g1254 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 Coils Coil 90 110 - -
Tpr3g1254 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1254 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1254 Tpr-Chr3 11198127 11198654 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1254 1 161 Type I MADS-box Gene Family AT2G34440 43.023 2.57e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1254 SRF-TF 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1254 - - mtr:MTR_4g131030 244.202