Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0363 ATGATCAAAGTCATGAAAAGTGATGCAGATGCAGGTGCCTTGGGTGCCAAGACAGCAAGGGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGCTGTGACAATTTGGTTCATTCAGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCGTCTGCTAAGGTAACAACTACAGCACAAGCATGGCATAGTGGATTCACAAGAAAAGCAAGAACTCCACGCCATAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTTAAGGAGAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTTGGACGCGAAGAAGAAGAACAAGGACAAGAATTACTTGTCGATATTGATGAAGCCGAGGAGGAGAATTTGCTTTGTCGAGTACCAGTTTTTGATGTCGATCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGGTGCTGATTTTGAGGAAATGTGTGATTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATGAGAATATTCATGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATAGATACATCTAAGAATGAAGTGTTAAAGGTTAAAGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAATGAATCATTAGCACATCATCAAGAGAAAGAGTTTGTGATGGTGAGTAATAATAGTGAGAGTGTTATTAGTACTAAAGAGGAAACTAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTAGTGCTTGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGGAAACCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTTTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGGGGACAATTAATGGGAAATAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAAAGAACATCATGTTTTGTTGGAGGAGTAGGAGTTGGAGGAGGAGGAGGAGGAGCCACTTCTCTTCCCACAAATTACCACTGA 1275 0.378 MIKVMKSDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGREEEEQGQELLVDIDEAEEENLLCRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNENIHENSSGQVFDYKQENEIDTSKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNNESLAHHQEKEFVMVSNNSESVISTKEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGNNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGVGVGGGGGGATSLPTNYH* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0363 424 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
Tpr3g0363 424 Pfam CCT motif 357 399 IPR010402 GO:0005515
Tpr3g0363 424 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 405 - -
Tpr3g0363 424 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Tpr3g0363 424 Coils Coil 122 142 - -
Tpr3g0363 424 SMART bboxneu5 17 64 IPR000315 GO:0008270
Tpr3g0363 424 CDD Bbox1_BBX-like 21 64 - -
Tpr3g0363 424 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Tpr3g0363 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 6 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0363 Tpr-Chr3 3897990 3900339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0363 4 399 C2C2-CO-like Transcription Factor Family AT1G25440 43.119 3.25e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr3g0363 zf-B_box 5.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0363 3 3897990 3900339 Tpr3g0363 3 3897990 3900339 ECH