Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0342 ATGCACACTCCCTTTTCTAATCAAATGGACAAACTCATATTCAATTGTTGCATTTCATACTTTCTCCTTTTCACTCTCTTTTTTGTGCATGGAAAAGAATTTTCATGCAATCAAACTCCATACCCTCATGTGTGCAACCATTACATTGGTTCCACTACCACAAATACACTATCAACCCTAGATTCTTCTTCTTTCCATGATATGGCTCTTAAGGTTACCATGGACCAAGCCATTGAAGCACAAAAACTTGTGTCAACCATGGATTTAAATAACTTCAAAGACAAGAAAGCCAAGTCAGCATGGGAAGATTGTCTAGAACTTTATGAGGATACAATTTATCAACTCAAAAGATCAATAAACTCAAACAATCTAAATGATAAATTAACTTGGCAAAGTGCTTCCATTACAAACCACCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCTTCCATGTTAGGCAATTTCTCTAAATTGCTTAGCAACTCCTTGTCCATTAGTAACACTCTAGCTTCATCATATTCATCCTCATCCTCATCCTCATCCTCCTCCTCCTCATCATCGTTGTCAACTACTAAACAAAATGGAGGAAGAAGGTTGTTGTCTGACAGATTTCCATCTTGGCTTTCTGGCTCAGATAGAAAACTGCTTCAGGCAACAACAGGAGCAGATATCGTAGTGGCACAAGATGGAAGCGGACACTATAAAACAATCTCAGAAGGTGTAGTTGGAGCTTCTAAACTTAGTGGGAAAGGAAGAGTTATTATTCATGTGAAAGCCGGTGTTTATAAAGAGAATGTTGATATCAAGAGATCAGTGCAAAATCTAATGATATTTGGAGATGGAATGGATTCCACTATTGTCACTGGTAATCAAAATGCTATAGATGGTTCTACAACTTTTCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCTAAAGACATAACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCAGTTGCTCTCCGTTCCGGCGCCGACCACTCCGTCTTCTACCGTTGCGCCTTCAAAGGCTACCAAGACACCTTATATGTTTACGCCAACCGTCAATTCTATCGTGACTGTAACATCTATGGAACAATCGATTTCATCTTCGGTAACGCTGTTTCCGTCCTTCAAAACTCCAACATCTTCATTAGAAAACCAATGAGTAACCAACAGAACACTGTAACAGCACAAGGGCGTACCGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTCGCATAACCGCCGCAGGTGATTTGAAACCGGTTCAGGGTTCTGTTAAAAGTTATCTTGGTAGACCATGGCAAAAATATTCAAGAACGGTTGTTATGAAAAGTAATATTGATGGTGTGATTAATTCTCAAGGTTGGGCTCCATGGATGGGTGGATTTGCTTTAAGTACTCTTTATTATGGCGAATATATGAATGTTGGTGGCGGTGCCGGTACCGGTGGAAGAGTTAATTGGCCTGGTTTTCATGTTATTACTAATCCTTCTGAGGCTGTTAAATTTTCTGTTGGGAATTTTTTGGCTGGTGGTTCTTGGATTGCTGGTAGTGGTGTGCCGTTTGATGCAGGTTTGTGA 1635 0.3988 MHTPFSNQMDKLIFNCCISYFLLFTLFFVHGKEFSCNQTPYPHVCNHYIGSTTTNTLSTLDSSSFHDMALKVTMDQAIEAQKLVSTMDLNNFKDKKAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLGNFSKLLSNSLSISNTLASSYSSSSSSSSSSSSSSLSTTKQNGGRRLLSDRFPSWLSGSDRKLLQATTGADIVVAQDGSGHYKTISEGVVGASKLSGKGRVIIHVKAGVYKENVDIKRSVQNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDITFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVSVLQNSNIFIRKPMSNQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKPVQGSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWMGGFALSTLYYGEYMNVGGGAGTGGRVNWPGFHVITNPSEAVKFSVGNFLAGGSWIAGSGVPFDAGL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0342 544 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 543 - -
Tpr3g0342 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 178 IPR006501 GO:0004857
Tpr3g0342 544 SMART PMEI_2 29 174 IPR006501 GO:0004857
Tpr3g0342 544 ProSitePatterns Pectinesterase signature 1. 258 277 IPR018040 -
Tpr3g0342 544 Gene3D - 226 544 IPR012334 -
Tpr3g0342 544 PANTHER PECTINESTERASE 27 543 - -
Tpr3g0342 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 178 IPR035513 -
Tpr3g0342 544 Pfam Pectinesterase 232 529 IPR000070 GO:0030599|GO:0042545
Tpr3g0342 544 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Tpr3g0342 544 CDD PMEI-like_3 35 179 - -
Tpr3g0342 544 SUPERFAMILY Pectin lyase-like 228 543 IPR011050 -
Tpr3g0342 544 Pfam Plant invertase/pectin methylesterase inhibitor 35 174 IPR006501 GO:0004857
Tpr3g0342 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Tpr3g0342 544 SMART complete 266 446 IPR006633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0342 Tpr-Chr3 3698466 3701492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0342 35 544 Carbohydrate Esterase AT1G23200 52.562 0.0 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0342 3 3698466 3701492 Tpr3g0342 3 3698466 3701492 ECH