Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0267 ATGCATCCTAACTTAGTGGCACCAGTGGTGTCCTCCCCAACTAATCTCCTGCAAGTGCCGGGTTCCAAACTCCGTCTCTTGTGCAGCTACGGAGGCCACATCATGCCACGTGACAACTCCCTTTACTATGTAGGCGGAGACACTCGCATTGTGGCCGTGGACCGCCACTCATCCTTAACACACCTTTGTTCTCACCTCTCCCGCAATCTCCTTCATGGAAGAAGATCATTCACTCTTAAGTACCATCTTCCCGATGAAGACCTTGACAATCTCATCACTGTTTCCACCGATGAAGACCTCCAAAACATGATCGAAGAGTATGATCGTTTGTCTTCAAACCCTTCCCCCTCCCCTTCTCGACTCAGATTGTTCCTCTTTTTCTCCAAACCAGAAACTGTTGTTTCCATGGACACTCTCCACCATGACGACTCTAATCATTCGTGGTTCGTGGAAGCTCTCAACAACTCAGGGATTCTCTCTCGGGTTGTTTCTGATTCTGCTGCGGTTGTTGATAATTGCCTCCTCAACATTGATGATTATGATGCAAGTGCTTCTAGCTGCAACGACGAAAATACTAATAATAACGTCAACAAGGAGCATTTAATTGATGTGGATTATTCCGCACCTGTGGACGAGGAGGACAACATGTTTAATTATTCATTTGATAATCTTCCTCAAATACGAGTTCGCATTGATGAACAGAAGCTTGTTGATATGGAGCAGCAGCAACAGCAGGAGGATAACAACTTTGACGATGTAAAAATGGCGAATGTGAAGCAAGATGATGCTTTTCATGTGCAATCACAGGTCAAAAGTGATCAAAATCATCAAGGGGAACAAGTAAACAATTCTACTTACACTTCAGCCCAACAACCGGATCAAAATCCGCAACAACCCGCCAAATATCAAAATCAATTTGTCTATATTCACCGTCCTATAGGTACAGGTCAAGTGTCAATATCATCATACTACCCTTATTATGCACCACAATCACACCAACAACTTAATCAGTTCCCAATTTATGTGATGCCTATTGGACTTGGATCTACACAACCATACAACATGGCTTTGCAACCCAATATAGCTGACACAAATGTAGTAGCCTCAGTTAGGCCACAAATACCACAAAGTGTTGTATCTGAAGTGACTCCAAGTGTTTATAAAGCTCCTGTTGCATCAAATTCTGGTTTTATTCAAATACCTTCCAACCAATTTCAGCAGCAATATGTGAATTTGCCTCAAAATATTCACCATCCACCACACCCTATTTATGGTTATGACTATGGTGGAGCTATGCAAGAACATGTATACTATACACAAACACAGCAACAGCATGCAAATGCAAATGCACCGTCTCAGTACCAATCCATGACCCCGGCGGTTGCTGGAGCAGCAATATCAGATGTTTCAAAACAATTTCCTACAGATAAAATTCAGCAGCCAAACAAAAACTCACAGCAAGTATGA 1467 0.4267 MHPNLVAPVVSSPTNLLQVPGSKLRLLCSYGGHIMPRDNSLYYVGGDTRIVAVDRHSSLTHLCSHLSRNLLHGRRSFTLKYHLPDEDLDNLITVSTDEDLQNMIEEYDRLSSNPSPSPSRLRLFLFFSKPETVVSMDTLHHDDSNHSWFVEALNNSGILSRVVSDSAAVVDNCLLNIDDYDASASSCNDENTNNNVNKEHLIDVDYSAPVDEEDNMFNYSFDNLPQIRVRIDEQKLVDMEQQQQQEDNNFDDVKMANVKQDDAFHVQSQVKSDQNHQGEQVNNSTYTSAQQPDQNPQQPAKYQNQFVYIHRPIGTGQVSISSYYPYYAPQSHQQLNQFPIYVMPIGLGSTQPYNMALQPNIADTNVVASVRPQIPQSVVSEVTPSVYKAPVASNSGFIQIPSNQFQQQYVNLPQNIHHPPHPIYGYDYGGAMQEHVYYTQTQQQHANANAPSQYQSMTPAVAGAAISDVSKQFPTDKIQQPNKNSQQV* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0267 488 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 249 481 - -
Tpr3g0267 488 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 17 235 - -
Tpr3g0267 488 SMART PB1_new 36 128 IPR000270 GO:0005515
Tpr3g0267 488 MobiDBLite consensus disorder prediction 267 300 - -
Tpr3g0267 488 CDD PB1_UP2 27 126 - -
Tpr3g0267 488 SUPERFAMILY CAD & PB1 domains 38 136 - -
Tpr3g0267 488 Pfam PB1 domain 37 126 IPR000270 GO:0005515
Tpr3g0267 488 Gene3D - 42 127 - -
Tpr3g0267 488 PANTHER OS05G0427100 PROTEIN-RELATED 249 481 - -
Tpr3g0267 488 PANTHER OS05G0427100 PROTEIN-RELATED 17 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0267 Tpr-Chr3 3073799 3075283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0267 23 155 MAP Kinase Kinase Kinase AT5G57610 45.985 1.12e-23 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0267 3 3073799 3075283 Tpr5g0295 5 4384477 4387551 ECH
Tpr1g0343 1 3003444 3006387 Tpr3g0267 3 3073799 3075283 ECH
Tpr3g0267 3 3073799 3075283 Tpr3g0267 3 3073799 3075283 ECH