Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3741 ATGACAGAGGTTAAAGACCCTGCGATAAAGCTTTTTGGAAGGACAATTCCACTTCCACTGATCATCCCAAATGACTCTTCATCTCCCTCTTCTTCTCCGCCAGAATTCAGCTCTGCAATACAACAAGAAACTGAGGAACCGTCAAGGAAAGAACCCGCCACAACACAAGATGATGATGCCTCACAACAAACCGCAGAGGATTTAAAATCTCTCACAACATCTTCAGTCATACTTGAGAATCCTCCTAAGACCCCCTCAGCTGAAACCGAGAATTCATTATTGAAATCTTCTACAAATGGAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTAAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGTATGGACACCAAATTTTGTTACTTCAACAATTACAACGTCAACCAGCCTCGTCATTTTTGCAAAAAATGTCAAAGATACTGGACTGCAGGAGGCACAATGAGAAATGTTCCTGTTGGTGCTGGTCGCCGCAAGAACAAGAACTTATCTAGCTCGCATTATCGACACTTGATAATTCCAGAGGCTGCTAAACTTAATTCCCCTAATGGATTACATATGGGAAATGGAGCAGCTGTATTGGCGTTTGATTCAGGTTCACCGCTTTGTAATACCATGGCTTCTGTGTTGAACATTGCTGAGAGAACACAGAATTGTGTGCCAAATGGTTTTCATCATCCAAATTCCTATGGTGGGGAAAGTGGTCACTCGAACGCAGTTTCGGTTACAACTTCAACTTCATCAGAGAGGAAAGGCCACGCTGACACAAATGGATCAGTGGATAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCCTTTTGCCTTATCCATGGAGTTCTGCAATGCCTCCTCCTGCATTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCGCCTGCATATTGGGGTTGTGTGCCACCGCCATGGAATATGCCATGTATCTCATCAGAAAGTGCTTCTGTTAACCACAGTGACTCTGCTCATAGTTCTGTCCCATATTCACCTACTTTGGGGAAACATTCAAGAGATGGAAACATCATTACCTCAGTCAACTCACAAAAAGAAAAGCCGGATAACGAACACAATAATACCGAAAGCAGCGTTTTGATCCCGAAAACACTTAGATTTGACGACCCAAATGAAGCCGCAAAGAGTTCATTATGGTCAAAGCTTGGGATCAATAACGACAAAGCCAGTTCAATCAATGGAGGAGGCATGTTCAATGGATTTCAATCCAAAGGAAAGGACATGAATCACTCGGTTGAGGCGTCGCCGCTGATGTATGCCAACCCTGCAGCTTTATCGCGGTCCCGTACCTTCCAAGAGGGAACCTGA 1398 0.4349 MTEVKDPAIKLFGRTIPLPLIIPNDSSSPSSSPPEFSSAIQQETEEPSRKEPATTQDDDASQQTAEDLKSLTTSSVILENPPKTPSAETENSLLKSSTNGEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEAAKLNSPNGLHMGNGAAVLAFDSGSPLCNTMASVLNIAERTQNCVPNGFHHPNSYGGESGHSNAVSVTTSTSSERKGHADTNGSVDKRVEGFPPQLQYIPSPLLPYPWSSAMPPPAFCPPNYPLAFYTPVTPPAYWGCVPPPWNMPCISSESASVNHSDSAHSSVPYSPTLGKHSRDGNIITSVNSQKEKPDNEHNNTESSVLIPKTLRFDDPNEAAKSSLWSKLGINNDKASSINGGGMFNGFQSKGKDMNHSVEASPLMYANPAALSRSRTFQEGT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3741 465 Pfam Dof domain, zinc finger 118 174 IPR003851 GO:0003677|GO:0006355
Tpr2g3741 465 MobiDBLite consensus disorder prediction 243 265 - -
Tpr2g3741 465 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 463 - -
Tpr2g3741 465 PANTHER CYCLIC DOF FACTOR 2 1 463 IPR045174 GO:0003700|GO:0006355
Tpr2g3741 465 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Tpr2g3741 465 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Tpr2g3741 465 MobiDBLite consensus disorder prediction 57 106 - -
Tpr2g3741 465 MobiDBLite consensus disorder prediction 14 113 - -
Tpr2g3741 465 MobiDBLite consensus disorder prediction 21 43 - -
Tpr2g3741 465 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3741 Tpr-Chr2 40426449 40430039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3741 4 463 C2C2-Dof Transcription Factor Family AT5G39660 38.791 7.82e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g3741 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3741 - - gmx:100813315 555.444