Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3601 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCGGCAATTGTTAGCATGATGCAAGGGCCAAGTTCGAGTGGCACCGATGCTAATCATCAGTCTTCCTTGAATCATGTGCAAAATTCAGTTGATTTCCGGTTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAGTGGCTGGAATACTGGTGAACCCAATTCTGGACTGAATCCGATCAACCAAGTCGAAGACGAAGGTCTAAAATCAGAACATATGTTGTCTTCTTCATACAGTGCTACTTCTGAGGATGGTGTAAGACCCGAGGAAGGGCAATTACTTGGGAACCAATCCAGAAACCACCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACAGCCCAGAGTATTAATCTCGGTATGGGGCACATTTCGAACTCTTCTGATCGCGGTAAAGGAAAAGAATCTAGTAGTGGTGTTAATAACCACAATCCCATTGAATTAGATATAGAGAAGACATCACTTGGCAGTTCTTCATTTAATCATATAGGAGCTCCGTCTGCCAGCTCTGGATACATGGCTTGGGGAGATAGTGGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCTTGCAAGAGAAAGGCCCTTGAAGGAAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGGAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGCTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTTCGTGTTACTAGTCCTCCATTTCAACAGACTACAAGAAATGAAGTGAGACAAGAAGCTCCAAATATGTTTCCTTCTATGATAAGTATTGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATCTACAGCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTACTAGACATCAGAATCACCCTTCTCCGCATCAAATACCCGGCTCTTTCTCATTTAACGAGTCCTTGGATTTGAGGTTAACAGCTGGAGCAACAGCTGCCAATTCTGCTGTTCCTCAAAACCAGTCACCTCCCCTGCACATGCATCCTTTTCCATGGAATAGAGCTGCTAATCCTAGAGTGTCCAGATCTTCAAATTCTTATAACTCGGGAGAAAGAGCAGTACGTGAAGATTTTAATTTTAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAACGTGCCTGCATCTTCAGGACATGAACCTACAGGTTGGTATACATCTTCCAGTAATGTGAACAATGCTGGAGGTATGCCGCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCATTACCTAATCCTGGCTGGACTTTTAACCATGAAGCCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCTTCAATCAGTTCAGCATCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCATATCCAAGAACATCATATTTGACGGAAAGAAGGGGTGGTGATGTTCTCTCTGCTCCACATTCACTGCGAACATTACCCTCTGACAACGAGGGTAGACGCCGGCTTATATCTGAGATTCGTCAAGTCCTGATTGCAATGCGGAGGGGTGAAAACTTGCGTGCTGAGGATTATATGCTCTTTGACCCTTTCTTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGAATAGGAGACGTAAGCACTGGACTGAGTGAAGATATGATTAATAAGTTTATGAAACAGCGATTTTTCATGTCTCTCATGACAGACTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGACATAGTATTGGTTTGCTAGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACAGCCTTGGCTACGTGA 2100 0.4395 MQGQRRTIGSFPAIVSMMQGPSSSGTDANHQSSLNHVQNSVDFRLSDYRGSSGETACLRGTGPNVSFSGWNTGEPNSGLNPINQVEDEGLKSEHMLSSSYSATSEDGVRPEEGQLLGNQSRNHPSFLQGSSSNHTAQSINLGMGHISNSSDRGKGKESSSGVNNHNPIELDIEKTSLGSSSFNHIGAPSASSGYMAWGDSGSSSSSLANWGPSCKRKALEGSSMQLCTGGSSSSLVQSGNGYWLTDSVDLNAPGSLGDLSPLEDFRVTSPPFQQTTRNEVRQEAPNMFPSMISIAENVERPLRNFDRRITHLQHPESVPLNLTSTGSTRHQNHPSPHQIPGSFSFNESLDLRLTAGATAANSAVPQNQSPPLHMHPFPWNRAANPRVSRSSNSYNSGERAVREDFNFRIFPRDSTEHPMNVPASSGHEPTGWYTSSSNVNNAGGMPPPSWIGSSSNVHSLPNPGWTFNHEAPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPYPRTSYLTERRGGDVLSAPHSLRTLPSDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDMINKFMKQRFFMSLMTDSSSDLEPCCICQEEYADGHSIGLLDCGHEFHSNCIKQWLMQKNLCPICKTTALAT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3601 699 MobiDBLite consensus disorder prediction 115 167 - -
Tpr2g3601 699 CDD RING-H2_TTC3 651 693 - -
Tpr2g3601 699 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 699 - -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 95 167 - -
Tpr2g3601 699 SUPERFAMILY RING/U-box 651 696 - -
Tpr2g3601 699 SMART ring_2 652 692 IPR001841 -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 362 395 - -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 493 526 - -
Tpr2g3601 699 Pfam Ring finger domain 652 693 IPR001841 -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 412 455 - -
Tpr2g3601 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Tpr2g3601 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 699 IPR045191 GO:0061630
Tpr2g3601 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 697 IPR013083 -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 427 455 - -
Tpr2g3601 699 MobiDBLite consensus disorder prediction 493 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3601 Tpr-Chr2 39119002 39123515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3601 1 699 C3H Transcription Factor Family AT2G15530 36.962 4.31e-106 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3601 2 39119002 39123515 Tpr2g3601 2 39119002 39123515 ECH
Tpr1g3668 1 40830779 40836837 Tpr2g3601 2 39119002 39123515 ECH