Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3045 ATGGCAATAGCAAGAGCAGTATCACCTACCATGAGCATGAGAATGAGCTTGAGCCATAGTCATGAAGATGGAAATAATAATACTACTACTACCAATTCTAACGACAGCAATACTAAGGCAACTACAGTAACAGCAGTAGTTGATGATGATGATGATGATCACGAGCATGACTTGGTTATGCCTGGTTTTCGTTTCCATCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTTGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTACTTCTATGTGCCTAGAGATAGGAAGTATCGGAACGGCGATCGTCCCAACCGAGTAACTACTTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATTAGAACTGAAAACTTCCGTTCAATTGGATTGAAGAAAACCCTAGTTTTCTATTCTGGTAAAGCTCCTAAAGGTATAAGAACCAGCTGGATTATGAACGAGTATCGCTTGCCTCAACATGAAACCGAAAGATATCAAAAGGGTGAGATATCTCTATGCCGTGTATACAAGAGAGCTGGAGTAGAAGATCATCCTTCCCTCCCTCGTTGTCTCCCAATCACCAGACCATCATCTGCAAGAGGTTCTTCACATAATAATTCAGACAAGAAGCAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCATCAAAGACACTAGTAATTGATCATGATGATGATAATGATGATGATCAAATACTTAACAAAATGGATGGAGGAGGAAGCAGTAGCGCCGGTGCCACCCACGGTAATTCTTCAGATCATGATCATGTGACAACAGCTCTTGGACTTTCCAAGTACAGTCCTCCTCCTCCTCCTCATCCTCATAATTACCGTACAGAGGAGGAAGAACAATTGATGATGATGCAACATCAACAGGCACCTAGGCAATTAGTACAATATGCAGCTGCAGCTGGAAACTCTTTGTTTGTCCCAGCTGTCTGTGGTGGCGCCATTTCAACGTCGGCAGCAGGAGCGAGTTGTTCTTCTAATAACGGTAGTACTGCAAGTGCTGCAATGATGATGGATGAACTCAACAGACTTGTAAGTTATCAACAACAGCAGCAATACTGTTACAATGTTCAAAACAATATTATTAATCCTCCTAATCCAAATCCCAATAATCATCATTTCTCTACTTTGCTGATGCAACCAATGTCTCTACCAAATCAACTACCAGCTGCAACTGCAACAACTTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGATCATAATCATAATCACCCCAACAGTAGTAGTAGTAACACTACCTCCTTCAAGTAA 1401 0.4233 MAIARAVSPTMSMRMSLSHSHEDGNNNTTTTNSNDSNTKATTVTAVVDDDDDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSARGSSHNNSDKKQNEILGMGFVVGQSSKTLVIDHDDDNDDDQILNKMDGGGSSSAGATHGNSSDHDHVTTALGLSKYSPPPPPHPHNYRTEEEEQLMMMQHQQAPRQLVQYAAAAGNSLFVPAVCGGAISTSAAGASCSSNNGSTASAAMMMDELNRLVSYQQQQQYCYNVQNNIINPPNPNPNNHHFSTLLMQPMSLPNQLPAATATTFSDRLWDWNPIPEDHNHNHPNSSSSNTTSFK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3045 466 SUPERFAMILY NAC domain 59 205 IPR036093 GO:0003677|GO:0006355
Tpr2g3045 466 Pfam No apical meristem (NAM) protein 61 185 IPR003441 GO:0003677|GO:0006355
Tpr2g3045 466 MobiDBLite consensus disorder prediction 224 238 - -
Tpr2g3045 466 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 41 452 - -
Tpr2g3045 466 MobiDBLite consensus disorder prediction 215 238 - -
Tpr2g3045 466 ProSiteProfiles NAC domain profile. 59 206 IPR003441 GO:0003677|GO:0006355
Tpr2g3045 466 Gene3D NAC domain 68 209 IPR036093 GO:0003677|GO:0006355
Tpr2g3045 466 MobiDBLite consensus disorder prediction 1 39 - -
Tpr2g3045 466 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 41 452 - -
Tpr2g3045 466 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3045 Tpr-Chr2 34696603 34699599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3045 58 235 NAC Transcription Factor Family AT2G02450 85.955 3.34e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr2g3045 NAM 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3045 - - mtr:MTR_4g134460 564.688