Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2356 ATGTTAGCTAACTGTGAGAAAATGGTTTCCATCCCTCCAACTACTAACCAATGGCCACAGAATCAGATAGATGATGGTAAAGTAATTATGGAAAAACAAGGTCAAGAGCTTATGCAGCAACAAGCACTTAAGTGTCCACGTTGTGATTCATCAAACACAAAATTCTGTTACTACAACAATTACAGTTTGTCACAACCAAGACACTTCTGCAAAGCCTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGCTACAAAAGAAACAACAAACGCAGTAATAATAGTACTAATCCTCTCATCAAAAGACCAATATCCACCATTGATTCTACTACTACTACTACTTCGGCTCCTAGTTCAACCTTAAATCATATTAGTCCTATGTTTTATGGTTTATCTAGACTCTCAAGTTCATCTGAGTATGATTTTCATCCTCAGATGAACTCGAGTGGACTAGGCGGCTTTTCGTCATCCGGGTTTGGTCATAATGGATTTACTTCATATAATAACAATCATGTTTCAAGATATGATTCTTCAATCTTTAGTCCTGCATCTTCCTCCTCAACTTCAATGTCAGTTATGCCTTCTACTCTGCTTCAATATAATTTCAACAATGATGGTTTGAAATATAGTCAAGATGCAAGTAGCAACTGTACTTTTCAAGGTTTAGAATTTGCTTCACTTGAGCATATGCAAAGAGCTATAAGTAATATTGGGAATGGAAGTGAGAAAGGGATGAAGAAAGTTGAAGGACAGAATCAGATTGAGCATGTGAATGGTTTGTATGATCCTTCTTCATTTTTCTGGAATGATCAAGGTGCTAATATTGGTTCATCAGTCACTTCTCTGATCTAA 873 0.37 MLANCEKMVSIPPTTNQWPQNQIDDGKVIMEKQGQELMQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYKRNNKRSNNSTNPLIKRPISTIDSTTTTTSAPSSTLNHISPMFYGLSRLSSSSEYDFHPQMNSSGLGGFSSSGFGHNGFTSYNNNHVSRYDSSIFSPASSSSTSMSVMPSTLLQYNFNNDGLKYSQDASSNCTFQGLEFASLEHMQRAISNIGNGSEKGMKKVEGQNQIEHVNGLYDPSSFFWNDQGANIGSSVTSLI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2356 290 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Tpr2g2356 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 227 IPR045174 GO:0003700|GO:0006355
Tpr2g2356 290 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Tpr2g2356 290 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 33 227 - -
Tpr2g2356 290 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2356 Tpr-Chr2 28410788 28412831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2356 32 108 C2C2-Dof Transcription Factor Family AT1G51700 69.231 1.88e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g2356 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2356 - - mtr:MTR_2g014170 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2356 2 28410788 28412831 Tpr2g2356 2 28410788 28412831 ECH
Tpr3g1946 3 17525065 17527252 Tpr2g2356 2 28410788 28412831 PCT