Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2246 ATGGCTTTGAAAAAGAGATTGGTATCTTCTTCAGAAACGACGTCGTGTGAAGAACGTTATGTAAGCTATGAAGAGGTGTTCGTACCGACGGATAAGGGTCGGAAAGAGGTTCGGTATTATCTGAAAAAGAAAAACGGTGGTTCGGATCTTGCTCTTATAGGTAAAGAAAAGAGTTCTAGACACATGTCTTATCACTATGCAATAAGAAAATCTTCTTTGGCTCCTTTCTTCAAACTCAAATCACGTAGAGAAGTTCTTGATTGGTTAGATTCAATTGTTCAAGATTTTTCTAACGGGGATGCGAATATGGTTGAGGGAAAACCTGGTTTTGAACCTGCGGAGATCGGAACCTTGAAGGATAATCAATTGCCAAAGCTGCGCCTTTGTACCAAAGAATTTGCATGGTTAGGGTCTCCGTGGACTTGTAAGAAAAGAAGATATCACTATGAGTCATTTAAGCGGAACGGTTTGCAGATATCTGTGAATGATTTTGTGTTTGTTTTAGCAGAGGAGAACAAACGTCTGGTTGCCTACTTGGAAGACATGTACGAGGATTCCAGAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTATTGCTTTGCCTCACAGTTTTAGTGAACGAGAGGTTTACTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCCCAGCACTACGAGAAGTATCGGAATGAAGCTTGTCATGCTCGTCCAGAACCATTTGTGTGCCGCAAGAAGTTTGATGATGACGATGTCAAACCGTTTGATATAACTCAAATCAAGGGTTATTGGAAACAGGAAATACTGAAGTCCTTGAATCCCCAATCTGACTCAAAGTCTAATAGGAGTTCAGGGAAATCAGAAGATAGCCAAGATCTGGAAGAAAACCTACAATCTTCTTCTGCGATCAGACCAAAGAAGAAGCAGCGGTTTACAAAAGTTGACGGAAAAGATGCAGTTGACTTAGTTTCCCTTCCATCTGAAAATTTGAGTAATTTTAAGATTGAGGCCAAAACCAGTAGTGGAAACAACTCCTTGAAACCGGTCGTGTCCAGCAAGTTGCCCACCATCAAAGAGACAAATGAAGCTGCTTCACAGTATTTAGCTGTAGGTTCCCAAGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTCCGAGCTTCTGTTATCAAGAAGCACAAAGATAAAGTGAAGGTGCAATATCACGACATCCAGGATGCAGATGATGAAGCTAAGAAGCTTGAGGAATGGATTTTAGCTTCTAAAATTGTGCTGCTTGATGATATAAGTCTCCGAGTACCTGAGAGGACCAAGATCCGGCCTCAGTTAAACAAACGTGGAATGTCGTTTGTGGGTGATGTTGGTTACGTTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAGTCTGATATTAAATATCATGTTTATTTCCCAGGCGAAAAGAAGCTGTTAATTTTTGGTCCTGGTAACTTAAGGCATTCTCAAGATTGGACAGGGAATGGATGGGTAAAAGTGAGGGAAAGGCCTGATCTTGTGGCTTCTATATTATCAAGCTTGAAAACAAAACAAAAATTGTGCAAATCTTTTAACAGAAAAGCAACCGTAGCAGCTATGGGAGATGGAATACAATCTAAGCAGGCTGATACTTTCTTGGGTTCTTCTGAAAGCAATGAACTTCGAAATGCTGATGTAGTCCCAGATCTTTTAAAGGATGTTTTGTTCTCCGAGTTGAGGTGGAAGTCATCCCGGAAGAGGAATCGAAGTGGTACCTCTCAGCAAAAGCAGCAGTCCAATGACAGACACAGCAGATTGTCCCCAAAGTTTCTCGAGTCGGATGCAACAGAAAGTTTTGTGATTCCAGCTTCATTGAAAGTTGACCATGACGACTGCAAATACCCTGGAGATCCTTCCATTTTCAGTTCCTCGGTCGTGCCATCTTTAACCAACATGGTCATGTGTATGTGA 2043 0.417 MALKKRLVSSSETTSCEERYVSYEEVFVPTDKGRKEVRYYLKKKNGGSDLALIGKEKSSRHMSYHYAIRKSSLAPFFKLKSRREVLDWLDSIVQDFSNGDANMVEGKPGFEPAEIGTLKDNQLPKLRLCTKEFAWLGSPWTCKKRRYHYESFKRNGLQISVNDFVFVLAEENKRLVAYLEDMYEDSRGNKMVVVRWFHRIDEVGIALPHSFSEREVYFSLYLQDLSIECIDGLTSVLSPQHYEKYRNEACHARPEPFVCRKKFDDDDVKPFDITQIKGYWKQEILKSLNPQSDSKSNRSSGKSEDSQDLEENLQSSSAIRPKKKQRFTKVDGKDAVDLVSLPSENLSNFKIEAKTSSGNNSLKPVVSSKLPTIKETNEAASQYLAVGSQVEVLSQDSGIRGCWFRASVIKKHKDKVKVQYHDIQDADDEAKKLEEWILASKIVLLDDISLRVPERTKIRPQLNKRGMSFVGDVGYVVDAWWHDGWWEGIVVQKESDIKYHVYFPGEKKLLIFGPGNLRHSQDWTGNGWVKVRERPDLVASILSSLKTKQKLCKSFNRKATVAAMGDGIQSKQADTFLGSSESNELRNADVVPDLLKDVLFSELRWKSSRKRNRSGTSQQKQQSNDRHSRLSPKFLESDATESFVIPASLKVDHDDCKYPGDPSIFSSSVVPSLTNMVMCM* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2246 680 ProSiteProfiles BAH domain profile. 157 274 IPR001025 GO:0003682
Tpr2g2246 680 SMART BAH_4 157 274 IPR001025 GO:0003682
Tpr2g2246 680 MobiDBLite consensus disorder prediction 289 326 - -
Tpr2g2246 680 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 13 679 - -
Tpr2g2246 680 Pfam BAH domain 159 265 IPR001025 GO:0003682
Tpr2g2246 680 SMART agenet_At_2 469 525 IPR014002 -
Tpr2g2246 680 SMART agenet_At_2 382 448 IPR014002 -
Tpr2g2246 680 Pfam Agenet domain 387 461 IPR008395 -
Tpr2g2246 680 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 679 - -
Tpr2g2246 680 MobiDBLite consensus disorder prediction 609 632 - -
Tpr2g2246 680 Gene3D - 140 385 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2246 Tpr-Chr2 26902857 26906818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2246 394 523 PHD Transcription Factor Family AT5G58610 29.851 5.50e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2246 2 26902857 26906818 Tpr2g2246 2 26902857 26906818 ECH