Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2042 ATGACAACACTTTACATGCCATTGTTCAGATCATGTTCAACCTTAAAACAACTCACTCAACTCCATGCTCACCTTGTAGTTACCAACCTTCACAATGACCCACTTGCCTCCACAAAGCTTCTTGAGTCTTATTCCCAAATGGGTTCTCTTCAATCATCAAGACTCGTTTTTTATTCATACCCATCTCCCGATTCCTTCATGTTTGGTGTTCTAATCAAATGTTACCTTTGGAATAACCTTTTTGACCAAGTTGTTTCTCTTTACAATCATCACATTTATAAGGGTTCAAAATTTACTCAAAATTGTAGTTTTTTGTATCCTTCTGTTATAAGAGCTGTTTCTGGTGTTGGTGATTTGGTTGTTGGAAGAAAATTACATGGAAGGATTGTTAAATCTGGGTTTAGTGAGGATCGCGTTATTGGGACTTCTTTGCTTGGAATGTATGGGGAATTATGTTGTTTAAGTGATGCTAAGAAGGTGTTTGATGAAATGTCTGTGAGAGATTTGGTTTCTTGGAGTTCGATTGTTTCGTGTTATATTGAGAATGGGATTTATAGAGAAGGATTGGAAATGTTTCGTTCGATGGTTTCTGAGGGAATTAGACCTGACTCGGTTACGTTGCTTAGTGTAGCTGAGGCTTGTGCTAAAATTGGTTGCTTGAGGTTAGCGAAATCGGTTCATGGATATGTGATTAGAGAAGGTATGATTGGTGATGGTAGTTTGAGTAATTCTCTTATTGTTATGTATAGTCAGTGTGGTTACTTGTGTAGAGCGAAACAGCTCTTTGAATATCTTGATAATCGGAGTACTTCTTGTTGGACTTCTATGATTTCATCCTATAATCAAAATGAGTGTTTTGAAGAGGCAATGGATGTTTTTATTAAGATGCAAGATTCAGAGGTAGACCCGAATGAAGTGACAATGATTAGTGTTCTGAATTCCTGCGCTAGATTAGGTCGGTTAAAAGAGGGAAAATCAGTTCATTGCTTTGTTTTAAGGAAAGCAATGAATTCTGCTGATCTTGATCTTGGGCCTGCACTAATAGATTTCTATGCAGCCTGCTGGACAATAAGTAGTTGCGAAAAACTTGTACATTTAATCGGAAACAAAAATGTTGTATCGTGGAATACACTCATTTCATTTTATGCTCGGGAAGGTTTAAACAAAGAAGCGATGATGCTCTTTGCGAAAATGATGGCGAAGGGTTTAATGCCAGACTCATTTAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTGCTGGTTCAATACAGTTTGGACAGCAGATACATGGTCATGCCATGAAAAGAGGCTTCGTCAATGAATTTGTTCAGAACTCTTTGATGGACATGTATTCAAAATGTGGCTTTCTGGATTTGGCATACACAATATTTAACAAGATCGGGAAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGGTTTTCTCAGAACGGCCTTTCATTAGAAGCACTCAACCTCTTTGATGAGATGTACAAAAATCGTCTCGAGTTTAATGAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGACAAAGGAAAATGGATTCACCATAAGATCATCGTGACCGGTAATCAGAACGATCTTTATATCGATACAGCTTTGGTAGACATGTATGCCAAGTGTGGAGACCTTCAAACAGCTCGAAGAGTTTTTGATAGCATGCTCGAGAAAAGTGTGGTGTCATGGAGTACAATGATTGCTGCTCATGGCATACACGGTCAAATAAATGCCGCAATCTCACTCTTCAATAAAATGGTTCGCTCAAATATCAAACCAAATGAAATAACCTTCATGAATATCTTATCCGCCTGCAGGCATGTTGGATCCGTCGAGGTAGGAAAGCTTTATTTCAACTCTATGAGGGATTATGGCATACTGCCCAACACAGAACATTTTGCCTCCATAGTTGACCTTCTAAGCCGTGCCGGCGATATCAACGGAGCATATGAAATAATTAAATCGATACGCCCACCCGTAGATGCTAGCATATGGGGAGCTTTGCTTAACGGGTGTCGAATACACAGGAGGATGGACATAATTGAGAACATTGGCGAAGAACTCGGACAAATAAACACAAATGATACAGGTTACTATACTTTGTTATCTAACATATATGCCGAAGGAGGAAAGTGGTACGAATCAAGAAAGGTAAGATCAAAGATGGAAGGAATGGGACTTAAGAAAGTACCTGGTTACAGTACAATCGAAATAGATAGGAAAATCTATAGATTTGGAGCTGGGGATACTTCTGAATGGCAAATGAAAGAAATTTGCATGTTTTTAGAAAATTTTCAAAGCTTGGCACAGGAACAAGGATGTGATTTAGAAAGCTATATGTATAATAATTCTAGAAGTGGTGTGTTTTTTGATGATTTTAGTGCTTATAACTTGCAGAGAGAAGCAAGCAATTGCATTGAGAATAAATCAGTTCTACTTTAG 2481 0.3809 MTTLYMPLFRSCSTLKQLTQLHAHLVVTNLHNDPLASTKLLESYSQMGSLQSSRLVFYSYPSPDSFMFGVLIKCYLWNNLFDQVVSLYNHHIYKGSKFTQNCSFLYPSVIRAVSGVGDLVVGRKLHGRIVKSGFSEDRVIGTSLLGMYGELCCLSDAKKVFDEMSVRDLVSWSSIVSCYIENGIYREGLEMFRSMVSEGIRPDSVTLLSVAEACAKIGCLRLAKSVHGYVIREGMIGDGSLSNSLIVMYSQCGYLCRAKQLFEYLDNRSTSCWTSMISSYNQNECFEEAMDVFIKMQDSEVDPNEVTMISVLNSCARLGRLKEGKSVHCFVLRKAMNSADLDLGPALIDFYAACWTISSCEKLVHLIGNKNVVSWNTLISFYAREGLNKEAMMLFAKMMAKGLMPDSFSLASSISASASAGSIQFGQQIHGHAMKRGFVNEFVQNSLMDMYSKCGFLDLAYTIFNKIGKKSIVTWNCMICGFSQNGLSLEALNLFDEMYKNRLEFNEVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTARRVFDSMLEKSVVSWSTMIAAHGIHGQINAAISLFNKMVRSNIKPNEITFMNILSACRHVGSVEVGKLYFNSMRDYGILPNTEHFASIVDLLSRAGDINGAYEIIKSIRPPVDASIWGALLNGCRIHRRMDIIENIGEELGQINTNDTGYYTLLSNIYAEGGKWYESRKVRSKMEGMGLKKVPGYSTIEIDRKIYRFGAGDTSEWQMKEICMFLENFQSLAQEQGCDLESYMYNNSRSGVFFDDFSAYNLQREASNCIENKSVLL* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 546 574 IPR002885 -
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Tpr2g2042 826 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Tpr2g2042 826 Gene3D Tetratricopeptide repeat domain 339 434 IPR011990 GO:0005515
Tpr2g2042 826 Gene3D Tetratricopeptide repeat domain 543 753 IPR011990 GO:0005515
Tpr2g2042 826 Pfam E motif 699 750 IPR046848 -
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Tpr2g2042 826 Pfam PPR repeat 170 200 IPR002885 -
Tpr2g2042 826 Pfam PPR repeat 142 167 IPR002885 -
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 571 IPR002885 -
Tpr2g2042 826 Gene3D Tetratricopeptide repeat domain 224 338 IPR011990 GO:0005515
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Tpr2g2042 826 Gene3D Tetratricopeptide repeat domain 90 223 IPR011990 GO:0005515
Tpr2g2042 826 Gene3D Tetratricopeptide repeat domain 435 527 IPR011990 GO:0005515
Tpr2g2042 826 Pfam PPR repeat family 571 618 IPR002885 -
Tpr2g2042 826 Pfam PPR repeat family 470 518 IPR002885 -
Tpr2g2042 826 Pfam PPR repeat family 370 409 IPR002885 -
Tpr2g2042 826 Pfam PPR repeat family 269 317 IPR002885 -
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Tpr2g2042 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 273 405 - -
Tpr2g2042 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 277 - -
Tpr2g2042 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 401 777 - -
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Tpr2g2042 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Tpr2g2042 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 401 777 - -
Tpr2g2042 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 273 405 - -
Tpr2g2042 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2042 Tpr-Chr2 24512521 24515413 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2042 2 24512521 24515413 Tpr2g2042 2 24512521 24515413 ECH