Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1995 ATGATGATTAATGATTCAACCATAAAGCTTTTTGGGAGAACCATTTTTCTAACACACAACAACATCGATGTCTCTACCGATGATTCTTCCTCAGAACTTGCTTCTCGACTTCCTTATGAAAATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCAACTTCTCCACTTGAAGTGAATTCTCCAACAGAACATGTTGCAAAGAGATATAAGGAAACATCAATCAAAGAACTAACCTCAATGCAAGATGATGAGGCTTCATTCCAAACTACAGAGGATTCAAAATCTCCCACATCCTCAAGCCTTGTTGAGAACCCGAAAACGCCTTTATCTGAGACAGAAACTTCTGAACTGAATTCCAGTAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAACAAACCAGACATAATTGTTCCATGTCCTAGATGCAAAAGCATGGACACAAAATTTTGTTACTACAACAACTACAACTTCAAACAGCCTCGACACTTCTGCAAAAACTGCCAGAGATACTGGACTGCTGGAGGAACCACGAGAAGTATGCTTATAGGCGCAGGCCGTCGCAAGAACAAAATCTCTTTTCCTTCTGATGTCTCGCATAATGGTCAAATGAGTACTACTGTCTTGGCCTTTGGATCAGATTCTCCAATGAATGTTGGATCACATGAAGGAACATCTGGTAAGAGTTCTCAGAGTGTTTTTCCTCCGCAGTTTCCATGGAACCCGACAATGTTTTATCCTGTGGCATTCTATCCCAATATAGCATACTATGGTGGTTGTTTGCCACCATCTTGGAGTGTACAATCTATCTCACCACAATCTTGTGCTCCAAGTAATCCTTCTTTAAGGAAACACTCAAGAGATGGAGAGATTATCTTTCATTCCAACTCAAAGAAAGGAAAACTTGGCTCAGAAAATAACAAGATAGAAAGTAATAATAATTGTGTGTTGATCCCTAAGATACTAAGAACAGGACTTTTCAAAGGATTTGCATCTAAGGGTGACGAGGAGAGTTATGTCGTTGAAGCATCCTCATCAATATTGCAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1110 0.391 MMINDSTIKLFGRTIFLTHNNIDVSTDDSSSELASRLPYENLSDHSLHSSLSSTSPLEVNSPTEHVAKRYKETSIKELTSMQDDEASFQTTEDSKSPTSSSLVENPKTPLSETETSELNSSKIDEQSDMSQDKSPNKPDIIVPCPRCKSMDTKFCYYNNYNFKQPRHFCKNCQRYWTAGGTTRSMLIGAGRRKNKISFPSDVSHNGQMSTTVLAFGSDSPMNVGSHEGTSGKSSQSVFPPQFPWNPTMFYPVAFYPNIAYYGGCLPPSWSVQSISPQSCAPSNPSLRKHSRDGEIIFHSNSKKGKLGSENNKIESNNNCVLIPKILRTGLFKGFASKGDEESYVVEASSSILQANPAALSRSLVFHERI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1995 369 MobiDBLite consensus disorder prediction 80 117 - -
Tpr2g1995 369 Pfam Dof domain, zinc finger 141 195 IPR003851 GO:0003677|GO:0006355
Tpr2g1995 369 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Tpr2g1995 369 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
Tpr2g1995 369 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 3 201 - -
Tpr2g1995 369 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 237 327 - -
Tpr2g1995 369 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 328 368 - -
Tpr2g1995 369 PANTHER CYCLIC DOF FACTOR 2 328 368 IPR045174 GO:0003700|GO:0006355
Tpr2g1995 369 PANTHER CYCLIC DOF FACTOR 2 3 201 IPR045174 GO:0003700|GO:0006355
Tpr2g1995 369 PANTHER CYCLIC DOF FACTOR 2 237 327 IPR045174 GO:0003700|GO:0006355
Tpr2g1995 369 MobiDBLite consensus disorder prediction 118 132 - -
Tpr2g1995 369 MobiDBLite consensus disorder prediction 80 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1995 Tpr-Chr2 23799806 23801916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1995 3 367 C2C2-Dof Transcription Factor Family AT5G39660 31.635 5.93e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g1995 zf-Dof 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1995 - - mtr:MTR_5g041530 450.669