Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1994 ATGATGATTAATGATTCATCCATGAAGCTTTTTGGGAGAACCATTTTTGTAACACACAACCATATCGATGTCTCTACCAATGATTCTTCCTCAGAATTTGATCATCATACTCATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCACAAACTCAACATGATGTTAAGAGATATAAGGAAACAAAAAGTAAAAAACTCACCTCAGTGCAAGATGATGATGAGGTCTCACAACAAACCACAGAGGATTTAAAAACTCCCACATCTTCAAGCCTTATTGAGAACCAGAAAACACCCTCATCAGAAGCCGAAACTTCTCAACTCAATTCGACTAAACTTGATGAACAAAGTGATATGTCACAAGACAAATCTCTAAAGAAACCAGACCAAATAGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCGCGACATTTCTGCAAAAACTGTCAGAGATATTGGACTGCTGGAGGAACCACGAGAAATATGCTTGTAGGCGCAGGCCGACGCAAGAACAAATTATCCTCTTCATTTTCTTCCGATGTCTCGCGTTGTCGTCAAATGAGTACTGTCTTAACCTTCGGATCAGATTCTTCAACTTCACTTAAGAAGAAAATGAATGTTGAATCACATGAAGAAAAAATTGATACTAATAGTTATCAAAGTTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATACTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAACCTATCTCACCACAATCTTGTGCTCCAACTTTAGGGAAACATTCCAGAGATGGAAACATTTTCAAGGGATTTACATCTAAGGGTGATGAGAATAATCATGAGGTTGAAGTATCATCATCAGTAATGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCATGTGTTTCACGAGAGGGTATGA 1017 0.3786 MMINDSSMKLFGRTIFVTHNHIDVSTNDSSSEFDHHTHEDLSDHSLHSSLSSSSPLEVNSQTQHDVKRYKETKSKKLTSVQDDDEVSQQTTEDLKTPTSSSLIENQKTPSSEAETSQLNSTKLDEQSDMSQDKSLKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSDVSRCRQMSTVLTFGSDSSTSLKKKMNVESHEEKIDTNSYQSFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCAPTLGKHSRDGNIFKGFTSKGDENNHEVEVSSSVMKANPAALSRSHVFHERV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1994 338 MobiDBLite consensus disorder prediction 46 62 - -
Tpr2g1994 338 MobiDBLite consensus disorder prediction 91 125 - -
Tpr2g1994 338 MobiDBLite consensus disorder prediction 63 82 - -
Tpr2g1994 338 Pfam Dof domain, zinc finger 139 195 IPR003851 GO:0003677|GO:0006355
Tpr2g1994 338 MobiDBLite consensus disorder prediction 28 45 - -
Tpr2g1994 338 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Tpr2g1994 338 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 298 337 - -
Tpr2g1994 338 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 220 300 - -
Tpr2g1994 338 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 3 200 - -
Tpr2g1994 338 PANTHER CYCLIC DOF FACTOR 2 3 200 IPR045174 GO:0003700|GO:0006355
Tpr2g1994 338 PANTHER CYCLIC DOF FACTOR 2 220 300 IPR045174 GO:0003700|GO:0006355
Tpr2g1994 338 PANTHER CYCLIC DOF FACTOR 2 298 337 IPR045174 GO:0003700|GO:0006355
Tpr2g1994 338 MobiDBLite consensus disorder prediction 28 137 - -
Tpr2g1994 338 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1994 Tpr-Chr2 23780047 23782248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1994 5 336 C2C2-Dof Transcription Factor Family AT1G69570 33.088 1.85e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g1994 zf-Dof 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1994 - - mtr:MTR_5g041420 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1994 2 23780047 23782248 Tpr2g1994 2 23780047 23782248 ECH
Tpr2g1994 2 23780047 23782248 Tpr3g4409 3 49161883 49165283 ECH
Tpr2g1994 2 23780047 23782248 Tpr6g3155 6 34051349 34054496 ECH
Tpr2g1994 2 23780047 23782248 Tpr2g0338 2 4002273 4005428 ECH