Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1571 ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTGTTGGTGATGATGCACAAGATGGATTTAATACTTTGAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAATATTTCTAAGGATTATGTGTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGGATCAAGAAGTTGTTTTCCAAATATATTGCTTTTTGTGGCAAGGTGTCAGCAGAAATCCATGAACTTGAGAAACTTGACGAGCCTACGCAAAAGCGCATCATAGACTTAATAATTGGGCTAGGAATTACCAAATTAGTCATGGGAATTTCATTCATGAAGCCTTCCTTGAAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGCCTAGTTTATGTGAATTATTCATTATATGTGGTGGCAAGCAAGTTTTTCTAAGGGGAAACAATGATGAGAAAATCATGGAAGATGATAGTGGAGTCATGGTTGCTAAAATGAGAGATAAGGTAACTTTTAAAGATTGGCTAGACAAAATGTTCAGTGACAAAACCAATGATTATTCTCAGAATAGATTAAGTGCATCTCCTTCAACAATTAATTTGGTCCAAAATCAATGGGAATTTTATCTTCAAGACATAGAAAATTATTATCAAGAATTATTATCATCAAATTTGGAAGAAGGAAGCTATGTGCAAGACAATGATAACTCACACATTAGTCCAATTGAGCCACATGTCACTGAATTGAACAATTCTAATAAGAATACTACAGGAAAAATTGAGATCATGAAAAATAAGCTAAACGAAGCTCACAAAACCATCGAGTTGAAGAGGAAAGAGACTAAGGAAAATATAGAGAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACAGCAGGGCCGAAGAAATTGAAGGTAGAATAAGGGAAGAAGTAAGTACAAAAGAGGGCATAAAGAAGGAATTGCAATTGGAGAAAGATCAAAGAGAAGAAATGACAATCGAGATTGAAGAGAGGAAACGAAGAATGAGTTCATTGGTAGAGCTTCAATCAGAACTATCAAACAAGCTTCAAATTTCAACAATAGCAAGATCAAGAGCAGAGACACAAGTAGAGAGAGCAGTGAGGGAGAGGGCCGAAATGGTGAGAGAGATAGAAGAGTTAAGGAAGCAAAGAGATGTGTTGAATAGAAGGATCGAGTTTTGCAAGCAAAAGGATGCCATAGGTATGGCCGCGAGACTAAGCGACAATGGAGCGAGTTTTGAGATGAGGGAGTATAGTGAGGTGGAGTTGAGGTTGGCGACCGATAACTTTTCGGAGCGGTTGAGGTTGAAGTCTGGTGGGGATTGGAGTAATGTATATAGAGGACGCTTCAACCATTCCAGTGTTGCAATTAAGTTGTTACCTTCTTTTGCTTCTTTGTCTCGAGAGGATTTTCAATCCAAGATGAGGTTTCTTGGTGATATTAGGCAACCACATCTAGTAGCCATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAATTTTTGAATACATGGGCAACGGAAGCTTACAAGACATGCTATTTTCTAGGCGAAGAAATCGGGGTTTACGGTGGCACGATCGAATACGAATAGCGACAGAAGTTTGCTCGGGCTTGGGCTTTCTTAACTCATCTCAACAAAGGCCCATTCTTCATTGTCATGTAAACCCAGCCCACATTCTTCTCGACCGCAATTTAGTCGCAAAAATCACGGGCTTTGGGCTTCAAGACTGCGACGACAAGGAATGCAACGTTGAGTCGGATTTACGGAGCGTAGGGATTTTGTTGATGCAGCTTTTGACCGGAAGAAATTGGGCCGGGCCCATTGAAGAGCCCATGACAATGGATATGGATAGAGAAACATTGGTTAATGTTCTTGATGACATGGCTGGACAGTGGCCATTGGATCTAGCAAAAGAGATTGTGAGCCTGGCTATGATTTGCATGTCTGTGAAAAGCAAGCCCAACCTAAATTTAAGCATTGCAAGGGTCTTAGAGGAACTCAATAAGATTAGAAGAAAGGGTGATGAAATAGTTGCAAAGGAGGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGCTCTAGTGATGTTCCTAGTGTTTTCCTTTGCCCTATACTTCAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCCTATGAGCTGGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAATTTAAGGCTGAAACACACATTACTTACACCAAATTACACACTCCGTTCCTTCCTAGAGGAATGGCAAACCAAACAATCAACTCAAATTGCAAACTAA 2421 0.3953 MDATQKEKIYVAVGDDAQDGFNTLNWALKKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEIHELEKLDEPTQKRIIDLIIGLGITKLVMGISFMKPSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMRDKVTFKDWLDKMFSDKTNDYSQNRLSASPSTINLVQNQWEFYLQDIENYYQELLSSNLEEGSYVQDNDNSHISPIEPHVTELNNSNKNTTGKIEIMKNKLNEAHKTIELKRKETKENIERRTKAEWAISLCNSRAEEIEGRIREEVSTKEGIKKELQLEKDQREEMTIEIEERKRRMSSLVELQSELSNKLQISTIARSRAETQVERAVRERAEMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGASFEMREYSEVELRLATDNFSERLRLKSGGDWSNVYRGRFNHSSVAIKLLPSFASLSREDFQSKMRFLGDIRQPHLVAMVGFCSEPKCIIFEYMGNGSLQDMLFSRRRNRGLRWHDRIRIATEVCSGLGFLNSSQQRPILHCHVNPAHILLDRNLVAKITGFGLQDCDDKECNVESDLRSVGILLMQLLTGRNWAGPIEEPMTMDMDRETLVNVLDDMAGQWPLDLAKEIVSLAMICMSVKSKPNLNLSIARVLEELNKIRRKGDEIVAKEDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTLLTPNYTLRSFLEEWQTKQSTQIAN* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1571 806 Coils Coil 338 365 - -
Tpr2g1571 806 Gene3D Transferase(Phosphotransferase) domain 1 536 712 - -
Tpr2g1571 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 805 IPR013083 -
Tpr2g1571 806 Pfam U-box domain 730 800 IPR003613 GO:0004842|GO:0016567
Tpr2g1571 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 799 - -
Tpr2g1571 806 CDD RING-Ubox_WDSUB1_like 734 775 - -
Tpr2g1571 806 SUPERFAMILY RING/U-box 727 802 - -
Tpr2g1571 806 Coils Coil 387 428 - -
Tpr2g1571 806 Gene3D Phosphorylase Kinase; domain 1 434 534 - -
Tpr2g1571 806 ProSiteProfiles Protein kinase domain profile. 462 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1571 806 SUPERFAMILY Protein kinase-like (PK-like) 443 681 IPR011009 -
Tpr2g1571 806 Pfam Protein tyrosine and serine/threonine kinase 471 609 IPR001245 GO:0004672|GO:0006468
Tpr2g1571 806 ProSiteProfiles U-box domain profile. 729 803 IPR003613 GO:0004842|GO:0016567
Tpr2g1571 806 Coils Coil 282 306 - -
Tpr2g1571 806 PANTHER OS02G0152300 PROTEIN 5 799 - -
Tpr2g1571 806 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1571 Tpr-Chr2 18466569 18472164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1571 3 806 U-box Gene Family AT5G65500 48.093 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tpr2g1571 PK_Tyr_Ser-Thr 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1571 - - gmx:100786771 1209.13