Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g1550 | ATGTCACCTGATGAAACAAAAACCTCAAAATCTCCAAAAGACAAAGACAACAACCAACAAGGTTCTGGTGGTGGTGGTGGTAAGAAAACATGTTCATCATCTTCAACTTCAACAACAAAACCACCACATGAACAAAACATGAAGTGTCCAAGATGTGATTCACCAAACACAAAATTCTGCTACTACAACAACTATAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACTAAAGGTGGAGCTTTACGCAACGTTCCGATCGGCGGCGGATGTAGAAAAAACAAGAAAATGAGACCATCATCATCATCATCAAGATTCTCTTGTGATAATTCAAAAGACTCTGCTTCTTCTTCAGAGCTTGTTGGTGGTTTAAAATTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTACTGGTTTACCTTTTCCAAGGCTTCAACTTCAACATCAACAAAATCATCATAATCTTTCTCCAATATTTAACCAGTTTTCATCTTTTGGAGAAACTTCTTCTGCTATGAATCATAATAATTACCCTGCTTCTTCAAATTCTATTGCTGGTTCTGCTATGAATTTTCCTTTTTCAGTTGGAAATAATAATAATTATAATGGTGCAATTCAAGGGATGAGCTCAATGAATATTCATAGTAACGTTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCTATGCTGTTTGGTGGTGGAGAAAATCAGCAGAAAGAAAATAATCAGACAGAGAAACCATTGCAACCTATTTTGTTTCAGAATCTTGAGGTTACAAAGCAGCAAGATGGTGGAAATTTTTCTGTTGGAAATTCAAGAAGAGAAAGTATAAATGGTGGAGATACACCAACTGAGTGGTTTTTTGGTAATTCTTATGGTTCTGTTGCTGCTACACCAACTGCTAGTGGCGGCGGTGGTGGTGGTGGACATGATAGTGGAAGCAACTGGAATGGTGGTGGTGGTGGCGGTGTTCATGGTTGGAGTGATGTGCAGCAGCAATATAGTGCTTTGCCCTAG | 1083 | 0.3823 | MSPDETKTSKSPKDKDNNQQGSGGGGGKKTCSSSSTSTTKPPHEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMRPSSSSSRFSCDNSKDSASSSELVGGLKFLHSLSSPSMDFHLGTGLPFPRLQLQHQQNHHNLSPIFNQFSSFGETSSAMNHNNYPASSNSIAGSAMNFPFSVGNNNNYNGAIQGMSSMNIHSNVASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQQKENNQTEKPLQPILFQNLEVTKQQDGGNFSVGNSRRESINGGDTPTEWFFGNSYGSVAATPTASGGGGGGGHDSGSNWNGGGGGGVHGWSDVQQQYSALP* | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g1550 | 360 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
Tpr2g1550 | 360 | MobiDBLite | consensus disorder prediction | 15 | 44 | - | - | |
Tpr2g1550 | 360 | MobiDBLite | consensus disorder prediction | 92 | 120 | - | - | |
Tpr2g1550 | 360 | ProSiteProfiles | Zinc finger Dof-type profile. | 47 | 101 | IPR003851 | GO:0003677|GO:0006355 | |
Tpr2g1550 | 360 | ProSitePatterns | Zinc finger Dof-type signature. | 49 | 85 | IPR003851 | GO:0003677|GO:0006355 | |
Tpr2g1550 | 360 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Tpr2g1550 | 360 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 15 | 360 | IPR045174 | GO:0003700|GO:0006355 | |
Tpr2g1550 | 360 | Pfam | Dof domain, zinc finger | 45 | 101 | IPR003851 | GO:0003677|GO:0006355 | |
Tpr2g1550 | 360 | PANTHER | DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED | 15 | 360 | - | - | |
Tpr2g1550 | 360 | MobiDBLite | consensus disorder prediction | 321 | 360 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g1550 | Tpr-Chr2 | 18276804 | 18278593 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g1550 | 33 | 360 | C2C2-Dof Transcription Factor Family | AT5G65590 | 41.420 | 2.39e-67 | 213 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Tpr2g1550 | zf-Dof | 1.7e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g1550 | - | - | gmx:100780729 | 376.326 |